Filename Description -------- ----------- jp_asrmdvx.align PSIBLAST alignment with gaps and redundancy removed in FASTA format jp_asrmdvx.als Alscript command file. Used to generate PS/PDF outputjp_asrmdvx.blast.gz PSIBLAST output (compressed) jp_asrmdvx.coils.csv The output from coils in CSV format jp_asrmdvx.coilseq.lupas_14 The output from coils using a window length of 14 jp_asrmdvx.coilseq.lupas_21 The output from coils using a window length of 21 jp_asrmdvx.coilseq.lupas_28 The output from coils using a window length of 28 jp_asrmdvx.concise The prediction in pseudo-CSV format, including the coiled-coil prediction, solvent accessiblity and the sequence alignment jp_asrmdvx.concise.blc A BLC file of the prediction and alignment jp_asrmdvx.concise.pdf A PDF file of the prediction and alignment jp_asrmdvx.fasta Input query sequence in FASTA format jp_asrmdvx.full_MSA.fasta The full multuple sequence alignment before JPred filters. Gaps/insertions shown. FASTA format. jp_asrmdvx.hmm The HHMer2 profile of the alignment jp_asrmdvx.html A HTML file of the prediction and alignment jp_asrmdvx.input Your raw input jp_asrmdvx.jalview A Jalview annotation file to be read in with the .align file to view the predictions in Jalview jp_asrmdvx.jnet The output from Jnet jp_asrmdvx.profile PSIBLAST profile jp_asrmdvx.pssm PSIBLAST PSSM in a format for Jnet jp_asrmdvx.seq Your sequence jp_asrmdvx.simple.html The brief HTML output of the query sequence and prediction only jp_asrmdvx.svg.html A Jalview generated SVG file with summary of the results.