SILENT_MODE BLOCK_FILE jp_dxIEmKy.concise.blc MAX_NSEQ 684 MAX_INPUT_LEN 686 OUTPUT_FILE jp_dxIEmKy.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 125 673 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 674 125 683 H SPACE SUB_CHARS 1 674 125 683 E SPACE SUB_CHARS 1 674 125 683 - SPACE STRAND 4 677 5 COLOUR_TEXT_REGION 4 677 5 677 51 STRAND 29 677 33 COLOUR_TEXT_REGION 29 677 33 677 51 STRAND 38 677 41 COLOUR_TEXT_REGION 38 677 41 677 51 STRAND 91 677 97 COLOUR_TEXT_REGION 91 677 97 677 51 STRAND 103 677 111 COLOUR_TEXT_REGION 103 677 111 677 51 STRAND 117 677 122 COLOUR_TEXT_REGION 117 677 122 677 51 HELIX 9 677 25 COLOUR_TEXT_REGION 9 677 25 677 50 HELIX 42 677 49 COLOUR_TEXT_REGION 42 677 49 677 50 HELIX 54 677 57 COLOUR_TEXT_REGION 54 677 57 677 50 HELIX 63 677 66 COLOUR_TEXT_REGION 63 677 66 677 50 HELIX 73 677 84 COLOUR_TEXT_REGION 73 677 84 677 50 STRAND 3 682 6 COLOUR_TEXT_REGION 3 682 6 682 51 STRAND 29 682 33 COLOUR_TEXT_REGION 29 682 33 682 51 STRAND 38 682 41 COLOUR_TEXT_REGION 38 682 41 682 51 STRAND 91 682 97 COLOUR_TEXT_REGION 91 682 97 682 51 STRAND 103 682 111 COLOUR_TEXT_REGION 103 682 111 682 51 STRAND 117 682 122 COLOUR_TEXT_REGION 117 682 122 682 51 HELIX 9 682 25 COLOUR_TEXT_REGION 9 682 25 682 50 HELIX 42 682 49 COLOUR_TEXT_REGION 42 682 49 682 50 HELIX 54 682 58 COLOUR_TEXT_REGION 54 682 58 682 50 HELIX 63 682 63 COLOUR_TEXT_REGION 63 682 63 682 50 HELIX 65 682 66 COLOUR_TEXT_REGION 65 682 66 682 50 HELIX 73 682 84 COLOUR_TEXT_REGION 73 682 84 682 50 STRAND 4 683 4 COLOUR_TEXT_REGION 4 683 4 683 51 STRAND 29 683 33 COLOUR_TEXT_REGION 29 683 33 683 51 STRAND 38 683 42 COLOUR_TEXT_REGION 38 683 42 683 51 STRAND 91 683 96 COLOUR_TEXT_REGION 91 683 96 683 51 STRAND 102 683 111 COLOUR_TEXT_REGION 102 683 111 683 51 STRAND 117 683 123 COLOUR_TEXT_REGION 117 683 123 683 51 HELIX 11 683 17 COLOUR_TEXT_REGION 11 683 17 683 50 HELIX 20 683 24 COLOUR_TEXT_REGION 20 683 24 683 50 HELIX 43 683 49 COLOUR_TEXT_REGION 43 683 49 683 50 HELIX 63 683 68 COLOUR_TEXT_REGION 63 683 68 683 50 HELIX 72 683 84 COLOUR_TEXT_REGION 72 683 84 683 50