SILENT_MODE
BLOCK_FILE jp_kiCENrd.concise.blc
MAX_NSEQ 887
MAX_INPUT_LEN 889
OUTPUT_FILE jp_kiCENrd.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 156 876   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 877 156 886 H SPACE
SUB_CHARS 1 877 156 886 E SPACE
SUB_CHARS 1 877 156 886 - SPACE
STRAND 33 880 43
COLOUR_TEXT_REGION 33 880 43 880 51
STRAND 62 880 66
COLOUR_TEXT_REGION 62 880 66 880 51
STRAND 91 880 94
COLOUR_TEXT_REGION 91 880 94 880 51
STRAND 111 880 115
COLOUR_TEXT_REGION 111 880 115 880 51
STRAND 123 880 135
COLOUR_TEXT_REGION 123 880 135 880 51
STRAND 137 880 140
COLOUR_TEXT_REGION 137 880 140 880 51
STRAND 145 880 148
COLOUR_TEXT_REGION 145 880 148 880 51
HELIX 7 880 12
COLOUR_TEXT_REGION 7 880 12 880 50
HELIX 49 880 55
COLOUR_TEXT_REGION 49 880 55 880 50
HELIX 76 880 87
COLOUR_TEXT_REGION 76 880 87 880 50
HELIX 101 880 105
COLOUR_TEXT_REGION 101 880 105 880 50
STRAND 33 885 43
COLOUR_TEXT_REGION 33 885 43 885 51
STRAND 62 885 66
COLOUR_TEXT_REGION 62 885 66 885 51
STRAND 74 885 76
COLOUR_TEXT_REGION 74 885 76 885 51
STRAND 91 885 94
COLOUR_TEXT_REGION 91 885 94 885 51
STRAND 99 885 99
COLOUR_TEXT_REGION 99 885 99 885 51
STRAND 111 885 113
COLOUR_TEXT_REGION 111 885 113 885 51
STRAND 124 885 135
COLOUR_TEXT_REGION 124 885 135 885 51
STRAND 138 885 140
COLOUR_TEXT_REGION 138 885 140 885 51
STRAND 145 885 148
COLOUR_TEXT_REGION 145 885 148 885 51
HELIX 7 885 12
COLOUR_TEXT_REGION 7 885 12 885 50
HELIX 49 885 55
COLOUR_TEXT_REGION 49 885 55 885 50
HELIX 77 885 87
COLOUR_TEXT_REGION 77 885 87 885 50
HELIX 101 885 105
COLOUR_TEXT_REGION 101 885 105 885 50
STRAND 27 886 27
COLOUR_TEXT_REGION 27 886 27 886 51
STRAND 33 886 43
COLOUR_TEXT_REGION 33 886 43 886 51
STRAND 62 886 67
COLOUR_TEXT_REGION 62 886 67 886 51
STRAND 91 886 93
COLOUR_TEXT_REGION 91 886 93 886 51
STRAND 111 886 117
COLOUR_TEXT_REGION 111 886 117 886 51
STRAND 123 886 140
COLOUR_TEXT_REGION 123 886 140 886 51
STRAND 145 886 148
COLOUR_TEXT_REGION 145 886 148 886 51
HELIX 8 886 13
COLOUR_TEXT_REGION 8 886 13 886 50
HELIX 48 886 55
COLOUR_TEXT_REGION 48 886 55 886 50
HELIX 76 886 87
COLOUR_TEXT_REGION 76 886 87 886 50
HELIX 90 886 90
COLOUR_TEXT_REGION 90 886 90 886 50
HELIX 101 886 105
COLOUR_TEXT_REGION 101 886 105 886 50