SILENT_MODE BLOCK_FILE jp_3KsxZCV.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_3KsxZCV.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 111 7 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 8 111 17 H SPACE SUB_CHARS 1 8 111 17 E SPACE SUB_CHARS 1 8 111 17 - SPACE STRAND 4 11 10 COLOUR_TEXT_REGION 4 11 10 11 51 STRAND 40 11 46 COLOUR_TEXT_REGION 40 11 46 11 51 STRAND 55 11 60 COLOUR_TEXT_REGION 55 11 60 11 51 STRAND 66 11 70 COLOUR_TEXT_REGION 66 11 70 11 51 STRAND 77 11 82 COLOUR_TEXT_REGION 77 11 82 11 51 STRAND 88 11 95 COLOUR_TEXT_REGION 88 11 95 11 51 STRAND 106 11 109 COLOUR_TEXT_REGION 106 11 109 11 51 HELIX 17 11 31 COLOUR_TEXT_REGION 17 11 31 11 50 STRAND 5 16 10 COLOUR_TEXT_REGION 5 16 10 16 51 STRAND 40 16 45 COLOUR_TEXT_REGION 40 16 45 16 51 STRAND 55 16 60 COLOUR_TEXT_REGION 55 16 60 16 51 STRAND 66 16 70 COLOUR_TEXT_REGION 66 16 70 16 51 STRAND 77 16 82 COLOUR_TEXT_REGION 77 16 82 16 51 STRAND 89 16 95 COLOUR_TEXT_REGION 89 16 95 16 51 STRAND 106 16 110 COLOUR_TEXT_REGION 106 16 110 16 51 HELIX 17 16 31 COLOUR_TEXT_REGION 17 16 31 16 50 STRAND 4 17 10 COLOUR_TEXT_REGION 4 17 10 17 51 STRAND 40 17 46 COLOUR_TEXT_REGION 40 17 46 17 51 STRAND 55 17 61 COLOUR_TEXT_REGION 55 17 61 17 51 STRAND 66 17 69 COLOUR_TEXT_REGION 66 17 69 17 51 STRAND 77 17 82 COLOUR_TEXT_REGION 77 17 82 17 51 STRAND 87 17 95 COLOUR_TEXT_REGION 87 17 95 17 51 STRAND 105 17 108 COLOUR_TEXT_REGION 105 17 108 17 51 HELIX 17 17 30 COLOUR_TEXT_REGION 17 17 30 17 50