QUERY                  : GSMYQLQFINLVYDTTKLTHLEQTNINLFIGNWSNHQLQKSICIRHGDDTSHNQYHILFIDTAHQRIKFSSFDNEEIIYILDYDDTQHILMQTSSKQGIGTSRPIVYERLV : QUERY 
UniRef90_L7WU34        : --MYQLHFIHINDDALTLTKSKQDTIHLFIGNWINPSAQKSISIRTGVDTNHNQYQILQIDTEHQRIKLTSEEDPQLMYILDYEDTNHIFIQTSVKNSYGTSRPIRYEKF- : UniRef90_L7WU34
UniRef90_UPI0002E88F18 : --MYQLQFINLDFNPSTLTKEQLNLIQQFLGNWKNQSLKKSISIRYERHTLLNQYQIIQIDSNHQRIKILPEDNQQIIYTLDYEDSQHILIQTSIHHSYGTSRPIRYEK-- : UniRef90_UPI0002E88F18
UniRef90_X9CJC9        : -----------------------------MGNWSNHQLQKSICIRHGDDTSHNQYHILFIDTAHQRIKFSSIDNEEITYILDYDDTQHILMQTSSKQGIGTSRPIVYERLV : UniRef90_X9CJC9

                       : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101------- :
OrigSeq                : GSMYQLQFINLVYDTTKLTHLEQTNINLFIGNWSNHQLQKSICIRHGDDTSHNQYHILFIDTAHQRIKFSSFDNEEIIYILDYDDTQHILMQTSSKQGIGTSRPIVYERLV : OrigSeq

Jnet                   : ---EEEEEEE------HHHHHHHHHHHHHHH--------EEEEEEE--------EEEEEE-----EEEEE------EEEEEE-----EEEEEEEE----------EEEE-- : Jnet
jhmm                   : ----EEEEEE------HHHHHHHHHHHHHHH--------EEEEEE---------EEEEEE-----EEEEE------EEEEEE------EEEEEEE----------EEEEE- : jhmm
jpssm                  : ---EEEEEEE------HHHHHHHHHHHHHH---------EEEEEEE--------EEEEEEE----EEEE-------EEEEEE----EEEEEEEEE---------EEEE--- : jpssm

Lupas 14               : --------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21               : --------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28               : --------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25                : --BBBBBBB-B-B-BB-BB---B--B--BBBBB----B--BBBB---------BBBBBBBB-----B-BB------BBBBBBB--B-BBBBBBB----BB--BBB-B--B- : Jnet_25
Jnet_5                 : -----B-BB-B--------------B--BB------------------------B-BB-B----------------BB-BB-------BB--------------------- : Jnet_5
Jnet_0                 : --------------------------------------------------------------------------------------------------------------- : Jnet_0
Jnet Rel               : 994289988514677501266565788874167752222245546036777651478887134525886268886258898648884288888620577777630530049 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.