SILENT_MODE
BLOCK_FILE jp_Uape2XI.concise.blc
MAX_NSEQ 736
MAX_INPUT_LEN 738
OUTPUT_FILE jp_Uape2XI.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 114 725   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 726 114 735 H SPACE
SUB_CHARS 1 726 114 735 E SPACE
SUB_CHARS 1 726 114 735 - SPACE
STRAND 5 729 9
COLOUR_TEXT_REGION 5 729 9 729 51
STRAND 22 729 29
COLOUR_TEXT_REGION 22 729 29 729 51
STRAND 34 729 41
COLOUR_TEXT_REGION 34 729 41 729 51
STRAND 52 729 58
COLOUR_TEXT_REGION 52 729 58 729 51
STRAND 68 729 70
COLOUR_TEXT_REGION 68 729 70 729 51
STRAND 80 729 83
COLOUR_TEXT_REGION 80 729 83 729 51
STRAND 87 729 94
COLOUR_TEXT_REGION 87 729 94 729 51
STRAND 104 729 112
COLOUR_TEXT_REGION 104 729 112 729 51
STRAND 5 734 9
COLOUR_TEXT_REGION 5 734 9 734 51
STRAND 22 734 29
COLOUR_TEXT_REGION 22 734 29 734 51
STRAND 34 734 43
COLOUR_TEXT_REGION 34 734 43 734 51
STRAND 52 734 59
COLOUR_TEXT_REGION 52 734 59 734 51
STRAND 68 734 71
COLOUR_TEXT_REGION 68 734 71 734 51
STRAND 81 734 83
COLOUR_TEXT_REGION 81 734 83 734 51
STRAND 87 734 94
COLOUR_TEXT_REGION 87 734 94 734 51
STRAND 105 734 112
COLOUR_TEXT_REGION 105 734 112 734 51
STRAND 5 735 10
COLOUR_TEXT_REGION 5 735 10 735 51
STRAND 22 735 28
COLOUR_TEXT_REGION 22 735 28 735 51
STRAND 34 735 39
COLOUR_TEXT_REGION 34 735 39 735 51
STRAND 52 735 57
COLOUR_TEXT_REGION 52 735 57 735 51
STRAND 80 735 83
COLOUR_TEXT_REGION 80 735 83 735 51
STRAND 87 735 94
COLOUR_TEXT_REGION 87 735 94 735 51
STRAND 104 735 112
COLOUR_TEXT_REGION 104 735 112 735 51