SILENT_MODE BLOCK_FILE jp_rxHqGaB.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_rxHqGaB.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 149 5 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 6 149 15 H SPACE SUB_CHARS 1 6 149 15 E SPACE SUB_CHARS 1 6 149 15 - SPACE STRAND 3 9 4 COLOUR_TEXT_REGION 3 9 4 9 51 STRAND 31 9 32 COLOUR_TEXT_REGION 31 9 32 9 51 STRAND 41 9 49 COLOUR_TEXT_REGION 41 9 49 9 51 STRAND 97 9 101 COLOUR_TEXT_REGION 97 9 101 9 51 STRAND 105 9 110 COLOUR_TEXT_REGION 105 9 110 9 51 STRAND 142 9 147 COLOUR_TEXT_REGION 142 9 147 9 51 HELIX 5 9 7 COLOUR_TEXT_REGION 5 9 7 9 50 HELIX 14 9 26 COLOUR_TEXT_REGION 14 9 26 9 50 HELIX 57 9 62 COLOUR_TEXT_REGION 57 9 62 9 50 HELIX 82 9 87 COLOUR_TEXT_REGION 82 9 87 9 50 HELIX 120 9 133 COLOUR_TEXT_REGION 120 9 133 9 50 STRAND 41 14 49 COLOUR_TEXT_REGION 41 14 49 14 51 STRAND 83 14 84 COLOUR_TEXT_REGION 83 14 84 14 51 STRAND 97 14 101 COLOUR_TEXT_REGION 97 14 101 14 51 STRAND 105 14 110 COLOUR_TEXT_REGION 105 14 110 14 51 STRAND 142 14 147 COLOUR_TEXT_REGION 142 14 147 14 51 HELIX 3 14 8 COLOUR_TEXT_REGION 3 14 8 14 50 HELIX 14 14 26 COLOUR_TEXT_REGION 14 14 26 14 50 HELIX 57 14 62 COLOUR_TEXT_REGION 57 14 62 14 50 HELIX 85 14 89 COLOUR_TEXT_REGION 85 14 89 14 50 HELIX 120 14 133 COLOUR_TEXT_REGION 120 14 133 14 50 STRAND 3 15 6 COLOUR_TEXT_REGION 3 15 6 15 51 STRAND 30 15 33 COLOUR_TEXT_REGION 30 15 33 15 51 STRAND 41 15 48 COLOUR_TEXT_REGION 41 15 48 15 51 STRAND 62 15 62 COLOUR_TEXT_REGION 62 15 62 15 51 STRAND 97 15 101 COLOUR_TEXT_REGION 97 15 101 15 51 STRAND 105 15 111 COLOUR_TEXT_REGION 105 15 111 15 51 STRAND 142 15 146 COLOUR_TEXT_REGION 142 15 146 15 51 HELIX 14 15 25 COLOUR_TEXT_REGION 14 15 25 15 50 HELIX 39 15 40 COLOUR_TEXT_REGION 39 15 40 15 50 HELIX 57 15 61 COLOUR_TEXT_REGION 57 15 61 15 50 HELIX 80 15 86 COLOUR_TEXT_REGION 80 15 86 15 50 HELIX 120 15 133 COLOUR_TEXT_REGION 120 15 133 15 50