SILENT_MODE BLOCK_FILE jp_QJPKmDF.concise.blc MAX_NSEQ 781 MAX_INPUT_LEN 783 OUTPUT_FILE jp_QJPKmDF.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 87 770 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 771 87 780 H SPACE SUB_CHARS 1 771 87 780 E SPACE SUB_CHARS 1 771 87 780 - SPACE STRAND 12 774 24 COLOUR_TEXT_REGION 12 774 24 774 51 STRAND 36 774 38 COLOUR_TEXT_REGION 36 774 38 774 51 STRAND 47 774 51 COLOUR_TEXT_REGION 47 774 51 774 51 STRAND 54 774 64 COLOUR_TEXT_REGION 54 774 64 774 51 STRAND 67 774 74 COLOUR_TEXT_REGION 67 774 74 774 51 HELIX 25 774 29 COLOUR_TEXT_REGION 25 774 29 774 50 HELIX 80 774 83 COLOUR_TEXT_REGION 80 774 83 774 50 STRAND 12 779 22 COLOUR_TEXT_REGION 12 779 22 779 51 STRAND 36 779 38 COLOUR_TEXT_REGION 36 779 38 779 51 STRAND 47 779 51 COLOUR_TEXT_REGION 47 779 51 779 51 STRAND 54 779 64 COLOUR_TEXT_REGION 54 779 64 779 51 STRAND 67 779 74 COLOUR_TEXT_REGION 67 779 74 779 51 HELIX 5 779 6 COLOUR_TEXT_REGION 5 779 6 779 50 HELIX 25 779 29 COLOUR_TEXT_REGION 25 779 29 779 50 HELIX 81 779 82 COLOUR_TEXT_REGION 81 779 82 779 50 STRAND 12 780 19 COLOUR_TEXT_REGION 12 780 19 780 51 STRAND 21 780 24 COLOUR_TEXT_REGION 21 780 24 780 51 STRAND 36 780 38 COLOUR_TEXT_REGION 36 780 38 780 51 STRAND 46 780 52 COLOUR_TEXT_REGION 46 780 52 780 51 STRAND 55 780 64 COLOUR_TEXT_REGION 55 780 64 780 51 STRAND 68 780 75 COLOUR_TEXT_REGION 68 780 75 780 51 HELIX 25 780 29 COLOUR_TEXT_REGION 25 780 29 780 50 HELIX 79 780 84 COLOUR_TEXT_REGION 79 780 84 780 50