SILENT_MODE
BLOCK_FILE jp_YytRfIZ.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_YytRfIZ.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 126 29   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 30 126 39 H SPACE
SUB_CHARS 1 30 126 39 E SPACE
SUB_CHARS 1 30 126 39 - SPACE
STRAND 6 33 10
COLOUR_TEXT_REGION 6 33 10 33 51
STRAND 27 33 31
COLOUR_TEXT_REGION 27 33 31 33 51
STRAND 50 33 57
COLOUR_TEXT_REGION 50 33 57 33 51
STRAND 87 33 92
COLOUR_TEXT_REGION 87 33 92 33 51
STRAND 106 33 113
COLOUR_TEXT_REGION 106 33 113 33 51
STRAND 119 33 125
COLOUR_TEXT_REGION 119 33 125 33 51
HELIX 42 33 49
COLOUR_TEXT_REGION 42 33 49 33 50
HELIX 67 33 69
COLOUR_TEXT_REGION 67 33 69 33 50
HELIX 74 33 76
COLOUR_TEXT_REGION 74 33 76 33 50
STRAND 6 38 9
COLOUR_TEXT_REGION 6 38 9 38 51
STRAND 27 38 31
COLOUR_TEXT_REGION 27 38 31 38 51
STRAND 52 38 57
COLOUR_TEXT_REGION 52 38 57 38 51
STRAND 87 38 92
COLOUR_TEXT_REGION 87 38 92 38 51
STRAND 106 38 113
COLOUR_TEXT_REGION 106 38 113 38 51
STRAND 119 38 125
COLOUR_TEXT_REGION 119 38 125 38 51
HELIX 42 38 50
COLOUR_TEXT_REGION 42 38 50 38 50
HELIX 66 38 69
COLOUR_TEXT_REGION 66 38 69 38 50
HELIX 74 38 77
COLOUR_TEXT_REGION 74 38 77 38 50
STRAND 6 39 12
COLOUR_TEXT_REGION 6 39 12 39 51
STRAND 26 39 32
COLOUR_TEXT_REGION 26 39 32 39 51
STRAND 49 39 57
COLOUR_TEXT_REGION 49 39 57 39 51
STRAND 67 39 67
COLOUR_TEXT_REGION 67 39 67 39 51
STRAND 87 39 92
COLOUR_TEXT_REGION 87 39 92 39 51
STRAND 106 39 113
COLOUR_TEXT_REGION 106 39 113 39 51
STRAND 119 39 125
COLOUR_TEXT_REGION 119 39 125 39 51
HELIX 43 39 48
COLOUR_TEXT_REGION 43 39 48 39 50
HELIX 68 39 68
COLOUR_TEXT_REGION 68 39 68 39 50