SILENT_MODE BLOCK_FILE jp_kSrZa3m.concise.blc MAX_NSEQ 946 MAX_INPUT_LEN 948 OUTPUT_FILE jp_kSrZa3m.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 325 935 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 936 325 945 H SPACE SUB_CHARS 1 936 325 945 E SPACE SUB_CHARS 1 936 325 945 - SPACE STRAND 4 939 9 COLOUR_TEXT_REGION 4 939 9 939 51 STRAND 49 939 54 COLOUR_TEXT_REGION 49 939 54 939 51 STRAND 86 939 91 COLOUR_TEXT_REGION 86 939 91 939 51 STRAND 112 939 117 COLOUR_TEXT_REGION 112 939 117 939 51 STRAND 149 939 154 COLOUR_TEXT_REGION 149 939 154 939 51 STRAND 165 939 167 COLOUR_TEXT_REGION 165 939 167 939 51 STRAND 183 939 187 COLOUR_TEXT_REGION 183 939 187 939 51 STRAND 191 939 194 COLOUR_TEXT_REGION 191 939 194 939 51 STRAND 218 939 222 COLOUR_TEXT_REGION 218 939 222 939 51 STRAND 242 939 247 COLOUR_TEXT_REGION 242 939 247 939 51 STRAND 270 939 276 COLOUR_TEXT_REGION 270 939 276 939 51 STRAND 282 939 283 COLOUR_TEXT_REGION 282 939 283 939 51 STRAND 290 939 292 COLOUR_TEXT_REGION 290 939 292 939 51 HELIX 34 939 41 COLOUR_TEXT_REGION 34 939 41 939 50 HELIX 65 939 80 COLOUR_TEXT_REGION 65 939 80 939 50 HELIX 95 939 106 COLOUR_TEXT_REGION 95 939 106 939 50 HELIX 130 939 142 COLOUR_TEXT_REGION 130 939 142 939 50 HELIX 230 939 235 COLOUR_TEXT_REGION 230 939 235 939 50 HELIX 255 939 266 COLOUR_TEXT_REGION 255 939 266 939 50 HELIX 298 939 310 COLOUR_TEXT_REGION 298 939 310 939 50 HELIX 315 939 323 COLOUR_TEXT_REGION 315 939 323 939 50 STRAND 4 944 9 COLOUR_TEXT_REGION 4 944 9 944 51 STRAND 49 944 54 COLOUR_TEXT_REGION 49 944 54 944 51 STRAND 86 944 91 COLOUR_TEXT_REGION 86 944 91 944 51 STRAND 113 944 117 COLOUR_TEXT_REGION 113 944 117 944 51 STRAND 149 944 154 COLOUR_TEXT_REGION 149 944 154 944 51 STRAND 164 944 168 COLOUR_TEXT_REGION 164 944 168 944 51 STRAND 183 944 187 COLOUR_TEXT_REGION 183 944 187 944 51 STRAND 191 944 193 COLOUR_TEXT_REGION 191 944 193 944 51 STRAND 218 944 222 COLOUR_TEXT_REGION 218 944 222 944 51 STRAND 242 944 248 COLOUR_TEXT_REGION 242 944 248 944 51 STRAND 270 944 276 COLOUR_TEXT_REGION 270 944 276 944 51 STRAND 290 944 292 COLOUR_TEXT_REGION 290 944 292 944 51 HELIX 34 944 41 COLOUR_TEXT_REGION 34 944 41 944 50 HELIX 65 944 80 COLOUR_TEXT_REGION 65 944 80 944 50 HELIX 95 944 106 COLOUR_TEXT_REGION 95 944 106 944 50 HELIX 129 944 141 COLOUR_TEXT_REGION 129 944 141 944 50 HELIX 229 944 236 COLOUR_TEXT_REGION 229 944 236 944 50 HELIX 255 944 266 COLOUR_TEXT_REGION 255 944 266 944 50 HELIX 298 944 310 COLOUR_TEXT_REGION 298 944 310 944 50 HELIX 315 944 323 COLOUR_TEXT_REGION 315 944 323 944 50 STRAND 4 945 9 COLOUR_TEXT_REGION 4 945 9 945 51 STRAND 17 945 17 COLOUR_TEXT_REGION 17 945 17 945 51 STRAND 49 945 54 COLOUR_TEXT_REGION 49 945 54 945 51 STRAND 86 945 90 COLOUR_TEXT_REGION 86 945 90 945 51 STRAND 112 945 117 COLOUR_TEXT_REGION 112 945 117 945 51 STRAND 149 945 154 COLOUR_TEXT_REGION 149 945 154 945 51 STRAND 184 945 187 COLOUR_TEXT_REGION 184 945 187 945 51 STRAND 190 945 194 COLOUR_TEXT_REGION 190 945 194 945 51 STRAND 218 945 222 COLOUR_TEXT_REGION 218 945 222 945 51 STRAND 242 945 247 COLOUR_TEXT_REGION 242 945 247 945 51 STRAND 271 945 276 COLOUR_TEXT_REGION 271 945 276 945 51 STRAND 281 945 283 COLOUR_TEXT_REGION 281 945 283 945 51 STRAND 289 945 292 COLOUR_TEXT_REGION 289 945 292 945 51 HELIX 34 945 40 COLOUR_TEXT_REGION 34 945 40 945 50 HELIX 65 945 80 COLOUR_TEXT_REGION 65 945 80 945 50 HELIX 96 945 106 COLOUR_TEXT_REGION 96 945 106 945 50 HELIX 132 945 142 COLOUR_TEXT_REGION 132 945 142 945 50 HELIX 255 945 266 COLOUR_TEXT_REGION 255 945 266 945 50 HELIX 298 945 309 COLOUR_TEXT_REGION 298 945 309 945 50 HELIX 315 945 323 COLOUR_TEXT_REGION 315 945 323 945 50