SILENT_MODE BLOCK_FILE jp_it8M1LY.concise.blc MAX_NSEQ 296 MAX_INPUT_LEN 298 OUTPUT_FILE jp_it8M1LY.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 287 285 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 286 287 295 H SPACE SUB_CHARS 1 286 287 295 E SPACE SUB_CHARS 1 286 287 295 - SPACE STRAND 26 289 27 COLOUR_TEXT_REGION 26 289 27 289 51 STRAND 48 289 55 COLOUR_TEXT_REGION 48 289 55 289 51 STRAND 79 289 86 COLOUR_TEXT_REGION 79 289 86 289 51 STRAND 103 289 108 COLOUR_TEXT_REGION 103 289 108 289 51 STRAND 139 289 143 COLOUR_TEXT_REGION 139 289 143 289 51 STRAND 147 289 149 COLOUR_TEXT_REGION 147 289 149 289 51 STRAND 162 289 165 COLOUR_TEXT_REGION 162 289 165 289 51 STRAND 187 289 189 COLOUR_TEXT_REGION 187 289 189 289 51 STRAND 196 289 201 COLOUR_TEXT_REGION 196 289 201 289 51 STRAND 230 289 233 COLOUR_TEXT_REGION 230 289 233 289 51 STRAND 244 289 244 COLOUR_TEXT_REGION 244 289 244 289 51 STRAND 269 289 275 COLOUR_TEXT_REGION 269 289 275 289 51 STRAND 281 289 282 COLOUR_TEXT_REGION 281 289 282 289 51 HELIX 34 289 42 COLOUR_TEXT_REGION 34 289 42 289 50 HELIX 59 289 73 COLOUR_TEXT_REGION 59 289 73 289 50 HELIX 119 289 134 COLOUR_TEXT_REGION 119 289 134 289 50 HELIX 206 289 226 COLOUR_TEXT_REGION 206 289 226 289 50 HELIX 239 289 243 COLOUR_TEXT_REGION 239 289 243 289 50 STRAND 19 294 19 COLOUR_TEXT_REGION 19 294 19 294 51 STRAND 26 294 28 COLOUR_TEXT_REGION 26 294 28 294 51 STRAND 48 294 55 COLOUR_TEXT_REGION 48 294 55 294 51 STRAND 79 294 86 COLOUR_TEXT_REGION 79 294 86 294 51 STRAND 104 294 108 COLOUR_TEXT_REGION 104 294 108 294 51 STRAND 139 294 143 COLOUR_TEXT_REGION 139 294 143 294 51 STRAND 147 294 149 COLOUR_TEXT_REGION 147 294 149 294 51 STRAND 162 294 165 COLOUR_TEXT_REGION 162 294 165 294 51 STRAND 188 294 189 COLOUR_TEXT_REGION 188 294 189 294 51 STRAND 196 294 201 COLOUR_TEXT_REGION 196 294 201 294 51 STRAND 230 294 233 COLOUR_TEXT_REGION 230 294 233 294 51 STRAND 244 294 245 COLOUR_TEXT_REGION 244 294 245 294 51 STRAND 269 294 274 COLOUR_TEXT_REGION 269 294 274 294 51 STRAND 281 294 282 COLOUR_TEXT_REGION 281 294 282 294 51 HELIX 17 294 18 COLOUR_TEXT_REGION 17 294 18 294 50 HELIX 34 294 38 COLOUR_TEXT_REGION 34 294 38 294 50 HELIX 40 294 41 COLOUR_TEXT_REGION 40 294 41 294 50 HELIX 58 294 74 COLOUR_TEXT_REGION 58 294 74 294 50 HELIX 119 294 134 COLOUR_TEXT_REGION 119 294 134 294 50 HELIX 207 294 226 COLOUR_TEXT_REGION 207 294 226 294 50 HELIX 238 294 243 COLOUR_TEXT_REGION 238 294 243 294 50 STRAND 48 295 55 COLOUR_TEXT_REGION 48 295 55 295 51 STRAND 79 295 86 COLOUR_TEXT_REGION 79 295 86 295 51 STRAND 102 295 108 COLOUR_TEXT_REGION 102 295 108 295 51 STRAND 139 295 144 COLOUR_TEXT_REGION 139 295 144 295 51 STRAND 146 295 150 COLOUR_TEXT_REGION 146 295 150 295 51 STRAND 187 295 190 COLOUR_TEXT_REGION 187 295 190 295 51 STRAND 196 295 199 COLOUR_TEXT_REGION 196 295 199 295 51 STRAND 230 295 233 COLOUR_TEXT_REGION 230 295 233 295 51 STRAND 241 295 244 COLOUR_TEXT_REGION 241 295 244 295 51 STRAND 270 295 276 COLOUR_TEXT_REGION 270 295 276 295 51 STRAND 281 295 283 COLOUR_TEXT_REGION 281 295 283 295 51 HELIX 34 295 43 COLOUR_TEXT_REGION 34 295 43 295 50 HELIX 60 295 69 COLOUR_TEXT_REGION 60 295 69 295 50 HELIX 119 295 134 COLOUR_TEXT_REGION 119 295 134 295 50 HELIX 162 295 163 COLOUR_TEXT_REGION 162 295 163 295 50 HELIX 205 295 226 COLOUR_TEXT_REGION 205 295 226 295 50