QUERY                  : MAKEFGIPAAVAGTVLNVVEAGGWVTTIVSILTAVGSGGLSLLAAAGRESIKAYLKKEIKKKGKRAVIAW : QUERY 
UniRef90_W2EF47        : LAKEFGIPASIAAVVLNIVNAGGAVTTIVSILLAVGSGGLSLLAAAGKETIRQFLKKKIQEKGKRATIAW : UniRef90_W2EF47
UniRef90_UPI0002D5F2B0 : LAKEFGIPGGVASTVVWLAEAGGAAATIVGILAALGTGGLSLIAAAGKETIRQYLRKKIQEKGRKAVIAW : UniRef90_UPI0002D5F2B0

                       : 1---------11--------21--------31--------41--------51--------61-------- :
OrigSeq                : MAKEFGIPAAVAGTVLNVVEAGGWVTTIVSILTAVGSGGLSLLAAAGRESIKAYLKKEIKKKGKRAVIAW : OrigSeq

Jnet                   : ---------HHHHHHHHHHH----HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--EEE--- : Jnet
jhmm                   : ---------HHHHHHHHHHH---HHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHHHHH--EEEE-- : jhmm
jpssm                  : ---------HHHHHHHHHH------HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH--HEE--- : jpssm

Lupas 14               : ---------------------------------------------------------------------- : Lupas 14
Lupas 21               : ---------------------------------------------------------------------- : Lupas 21
Lupas 28               : ---------------------------------------------------------------------- : Lupas 28

Jnet_25                : ----B-BBB-BBBBBBBBB--BBBBBBBBBBBBBBB-BBBBBBBBBB---B--BB---B---B--BB--- : Jnet_25
Jnet_5                 : ----------BB-BBB-BB--------BB-BB-------B-BB-------B---B---B----------- : Jnet_5
Jnet_0                 : --------------B-----------------------------------B------------------- : Jnet_0
Jnet Rel               : 9977876511566665541078812156888887407871178993199999999999986321112179 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.