SILENT_MODE
BLOCK_FILE jp_29x48N2.concise.blc
MAX_NSEQ 772
MAX_INPUT_LEN 774
OUTPUT_FILE jp_29x48N2.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 72 761   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 762 72 771 H SPACE
SUB_CHARS 1 762 72 771 E SPACE
SUB_CHARS 1 762 72 771 - SPACE
STRAND 5 765 10
COLOUR_TEXT_REGION 5 765 10 765 51
STRAND 28 765 30
COLOUR_TEXT_REGION 28 765 30 765 51
STRAND 35 765 35
COLOUR_TEXT_REGION 35 765 35 765 51
STRAND 41 765 45
COLOUR_TEXT_REGION 41 765 45 765 51
STRAND 66 765 68
COLOUR_TEXT_REGION 66 765 68 765 51
HELIX 14 765 23
COLOUR_TEXT_REGION 14 765 23 765 50
HELIX 53 765 61
COLOUR_TEXT_REGION 53 765 61 765 50
STRAND 3 770 10
COLOUR_TEXT_REGION 3 770 10 770 51
STRAND 28 770 30
COLOUR_TEXT_REGION 28 770 30 770 51
STRAND 35 770 36
COLOUR_TEXT_REGION 35 770 36 770 51
STRAND 41 770 45
COLOUR_TEXT_REGION 41 770 45 770 51
STRAND 66 770 68
COLOUR_TEXT_REGION 66 770 68 770 51
HELIX 12 770 12
COLOUR_TEXT_REGION 12 770 12 770 50
HELIX 14 770 23
COLOUR_TEXT_REGION 14 770 23 770 50
HELIX 53 770 61
COLOUR_TEXT_REGION 53 770 61 770 50
STRAND 7 771 10
COLOUR_TEXT_REGION 7 771 10 771 51
STRAND 27 771 31
COLOUR_TEXT_REGION 27 771 31 771 51
STRAND 41 771 46
COLOUR_TEXT_REGION 41 771 46 771 51
STRAND 66 771 68
COLOUR_TEXT_REGION 66 771 68 771 51
HELIX 14 771 23
COLOUR_TEXT_REGION 14 771 23 771 50
HELIX 53 771 61
COLOUR_TEXT_REGION 53 771 61 771 50