SILENT_MODE BLOCK_FILE jp_1T4hTvm.concise.blc MAX_NSEQ 857 MAX_INPUT_LEN 859 OUTPUT_FILE jp_1T4hTvm.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 234 846 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 847 234 856 H SPACE SUB_CHARS 1 847 234 856 E SPACE SUB_CHARS 1 847 234 856 - SPACE STRAND 34 850 41 COLOUR_TEXT_REGION 34 850 41 850 51 STRAND 67 850 73 COLOUR_TEXT_REGION 67 850 73 850 51 STRAND 102 850 112 COLOUR_TEXT_REGION 102 850 112 850 51 STRAND 156 850 163 COLOUR_TEXT_REGION 156 850 163 850 51 STRAND 172 850 172 COLOUR_TEXT_REGION 172 850 172 850 51 STRAND 178 850 183 COLOUR_TEXT_REGION 178 850 183 850 51 STRAND 215 850 220 COLOUR_TEXT_REGION 215 850 220 850 51 HELIX 5 850 10 COLOUR_TEXT_REGION 5 850 10 850 50 HELIX 19 850 30 COLOUR_TEXT_REGION 19 850 30 850 50 HELIX 48 850 62 COLOUR_TEXT_REGION 48 850 62 850 50 HELIX 84 850 97 COLOUR_TEXT_REGION 84 850 97 850 50 HELIX 119 850 130 COLOUR_TEXT_REGION 119 850 130 850 50 HELIX 140 850 149 COLOUR_TEXT_REGION 140 850 149 850 50 HELIX 188 850 197 COLOUR_TEXT_REGION 188 850 197 850 50 STRAND 34 855 40 COLOUR_TEXT_REGION 34 855 40 855 51 STRAND 68 855 73 COLOUR_TEXT_REGION 68 855 73 855 51 STRAND 102 855 112 COLOUR_TEXT_REGION 102 855 112 855 51 STRAND 156 855 163 COLOUR_TEXT_REGION 156 855 163 855 51 STRAND 172 855 173 COLOUR_TEXT_REGION 172 855 173 855 51 STRAND 178 855 183 COLOUR_TEXT_REGION 178 855 183 855 51 STRAND 215 855 220 COLOUR_TEXT_REGION 215 855 220 855 51 HELIX 5 855 10 COLOUR_TEXT_REGION 5 855 10 855 50 HELIX 19 855 30 COLOUR_TEXT_REGION 19 855 30 855 50 HELIX 47 855 62 COLOUR_TEXT_REGION 47 855 62 855 50 HELIX 84 855 97 COLOUR_TEXT_REGION 84 855 97 855 50 HELIX 119 855 130 COLOUR_TEXT_REGION 119 855 130 855 50 HELIX 140 855 149 COLOUR_TEXT_REGION 140 855 149 855 50 HELIX 188 855 197 COLOUR_TEXT_REGION 188 855 197 855 50 STRAND 34 856 41 COLOUR_TEXT_REGION 34 856 41 856 51 STRAND 67 856 73 COLOUR_TEXT_REGION 67 856 73 856 51 STRAND 101 856 113 COLOUR_TEXT_REGION 101 856 113 856 51 STRAND 157 856 163 COLOUR_TEXT_REGION 157 856 163 856 51 STRAND 169 856 170 COLOUR_TEXT_REGION 169 856 170 856 51 STRAND 178 856 183 COLOUR_TEXT_REGION 178 856 183 856 51 STRAND 215 856 221 COLOUR_TEXT_REGION 215 856 221 856 51 HELIX 6 856 11 COLOUR_TEXT_REGION 6 856 11 856 50 HELIX 19 856 30 COLOUR_TEXT_REGION 19 856 30 856 50 HELIX 50 856 63 COLOUR_TEXT_REGION 50 856 63 856 50 HELIX 84 856 97 COLOUR_TEXT_REGION 84 856 97 856 50 HELIX 119 856 131 COLOUR_TEXT_REGION 119 856 131 856 50 HELIX 140 856 147 COLOUR_TEXT_REGION 140 856 147 856 50 HELIX 188 856 197 COLOUR_TEXT_REGION 188 856 197 856 50