SILENT_MODE BLOCK_FILE jp_GYvgZlt.concise.blc MAX_NSEQ 1106 MAX_INPUT_LEN 1108 OUTPUT_FILE jp_GYvgZlt.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 198 1095 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 1096 198 1105 H SPACE SUB_CHARS 1 1096 198 1105 E SPACE SUB_CHARS 1 1096 198 1105 - SPACE STRAND 15 1099 19 COLOUR_TEXT_REGION 15 1099 19 1099 51 STRAND 69 1099 73 COLOUR_TEXT_REGION 69 1099 73 1099 51 STRAND 106 1099 108 COLOUR_TEXT_REGION 106 1099 108 1099 51 STRAND 120 1099 121 COLOUR_TEXT_REGION 120 1099 121 1099 51 STRAND 191 1099 195 COLOUR_TEXT_REGION 191 1099 195 1099 51 HELIX 30 1099 33 COLOUR_TEXT_REGION 30 1099 33 1099 50 HELIX 40 1099 40 COLOUR_TEXT_REGION 40 1099 40 1099 50 HELIX 43 1099 50 COLOUR_TEXT_REGION 43 1099 50 1099 50 HELIX 188 1099 190 COLOUR_TEXT_REGION 188 1099 190 1099 50 STRAND 4 1104 4 COLOUR_TEXT_REGION 4 1104 4 1104 51 STRAND 16 1104 18 COLOUR_TEXT_REGION 16 1104 18 1104 51 STRAND 69 1104 73 COLOUR_TEXT_REGION 69 1104 73 1104 51 STRAND 94 1104 96 COLOUR_TEXT_REGION 94 1104 96 1104 51 STRAND 106 1104 109 COLOUR_TEXT_REGION 106 1104 109 1104 51 STRAND 119 1104 122 COLOUR_TEXT_REGION 119 1104 122 1104 51 STRAND 187 1104 195 COLOUR_TEXT_REGION 187 1104 195 1104 51 HELIX 30 1104 33 COLOUR_TEXT_REGION 30 1104 33 1104 50 HELIX 43 1104 52 COLOUR_TEXT_REGION 43 1104 52 1104 50 STRAND 15 1105 19 COLOUR_TEXT_REGION 15 1105 19 1105 51 STRAND 68 1105 73 COLOUR_TEXT_REGION 68 1105 73 1105 51 STRAND 171 1105 173 COLOUR_TEXT_REGION 171 1105 173 1105 51 STRAND 195 1105 195 COLOUR_TEXT_REGION 195 1105 195 1105 51 HELIX 30 1105 33 COLOUR_TEXT_REGION 30 1105 33 1105 50 HELIX 39 1105 50 COLOUR_TEXT_REGION 39 1105 50 1105 50 HELIX 66 1105 67 COLOUR_TEXT_REGION 66 1105 67 1105 50 HELIX 188 1105 194 COLOUR_TEXT_REGION 188 1105 194 1105 50