SILENT_MODE
BLOCK_FILE jp_nU8_uCD.concise.blc
MAX_NSEQ 246
MAX_INPUT_LEN 248
OUTPUT_FILE jp_nU8_uCD.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 87 235   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 236 87 245 H SPACE
SUB_CHARS 1 236 87 245 E SPACE
SUB_CHARS 1 236 87 245 - SPACE
HELIX 4 239 11
COLOUR_TEXT_REGION 4 239 11 239 50
HELIX 29 239 45
COLOUR_TEXT_REGION 29 239 45 239 50
HELIX 56 239 59
COLOUR_TEXT_REGION 56 239 59 239 50
HELIX 72 239 83
COLOUR_TEXT_REGION 72 239 83 239 50
HELIX 4 244 10
COLOUR_TEXT_REGION 4 244 10 244 50
HELIX 29 244 45
COLOUR_TEXT_REGION 29 244 45 244 50
HELIX 72 244 83
COLOUR_TEXT_REGION 72 244 83 244 50
HELIX 4 245 11
COLOUR_TEXT_REGION 4 245 11 245 50
HELIX 29 245 45
COLOUR_TEXT_REGION 29 245 45 245 50
HELIX 55 245 61
COLOUR_TEXT_REGION 55 245 61 245 50
HELIX 72 245 83
COLOUR_TEXT_REGION 72 245 83 245 50