SILENT_MODE
BLOCK_FILE jp_EMthxvx.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_EMthxvx.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 199 38   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 39 199 48 H SPACE
SUB_CHARS 1 39 199 48 E SPACE
SUB_CHARS 1 39 199 48 - SPACE
STRAND 12 42 15
COLOUR_TEXT_REGION 12 42 15 42 51
STRAND 20 42 21
COLOUR_TEXT_REGION 20 42 21 42 51
STRAND 37 42 44
COLOUR_TEXT_REGION 37 42 44 42 51
STRAND 54 42 58
COLOUR_TEXT_REGION 54 42 58 42 51
STRAND 65 42 68
COLOUR_TEXT_REGION 65 42 68 42 51
STRAND 88 42 91
COLOUR_TEXT_REGION 88 42 91 42 51
STRAND 96 42 100
COLOUR_TEXT_REGION 96 42 100 42 51
STRAND 103 42 103
COLOUR_TEXT_REGION 103 42 103 42 51
STRAND 109 42 114
COLOUR_TEXT_REGION 109 42 114 42 51
STRAND 126 42 130
COLOUR_TEXT_REGION 126 42 130 42 51
STRAND 135 42 139
COLOUR_TEXT_REGION 135 42 139 42 51
STRAND 144 42 151
COLOUR_TEXT_REGION 144 42 151 42 51
STRAND 157 42 162
COLOUR_TEXT_REGION 157 42 162 42 51
STRAND 166 42 169
COLOUR_TEXT_REGION 166 42 169 42 51
STRAND 182 42 186
COLOUR_TEXT_REGION 182 42 186 42 51
STRAND 194 42 194
COLOUR_TEXT_REGION 194 42 194 42 51
STRAND 12 47 14
COLOUR_TEXT_REGION 12 47 14 47 51
STRAND 20 47 21
COLOUR_TEXT_REGION 20 47 21 47 51
STRAND 37 47 44
COLOUR_TEXT_REGION 37 47 44 47 51
STRAND 54 47 58
COLOUR_TEXT_REGION 54 47 58 47 51
STRAND 65 47 69
COLOUR_TEXT_REGION 65 47 69 47 51
STRAND 88 47 90
COLOUR_TEXT_REGION 88 47 90 47 51
STRAND 95 47 100
COLOUR_TEXT_REGION 95 47 100 47 51
STRAND 108 47 114
COLOUR_TEXT_REGION 108 47 114 47 51
STRAND 126 47 129
COLOUR_TEXT_REGION 126 47 129 47 51
STRAND 135 47 139
COLOUR_TEXT_REGION 135 47 139 47 51
STRAND 144 47 151
COLOUR_TEXT_REGION 144 47 151 47 51
STRAND 157 47 161
COLOUR_TEXT_REGION 157 47 161 47 51
STRAND 166 47 170
COLOUR_TEXT_REGION 166 47 170 47 51
STRAND 182 47 186
COLOUR_TEXT_REGION 182 47 186 47 51
HELIX 91 47 91
COLOUR_TEXT_REGION 91 47 91 47 50
STRAND 11 48 15
COLOUR_TEXT_REGION 11 48 15 48 51
STRAND 20 48 21
COLOUR_TEXT_REGION 20 48 21 48 51
STRAND 33 48 33
COLOUR_TEXT_REGION 33 48 33 48 51
STRAND 38 48 44
COLOUR_TEXT_REGION 38 48 44 48 51
STRAND 55 48 59
COLOUR_TEXT_REGION 55 48 59 48 51
STRAND 67 48 67
COLOUR_TEXT_REGION 67 48 67 48 51
STRAND 89 48 91
COLOUR_TEXT_REGION 89 48 91 48 51
STRAND 96 48 99
COLOUR_TEXT_REGION 96 48 99 48 51
STRAND 103 48 104
COLOUR_TEXT_REGION 103 48 104 48 51
STRAND 109 48 114
COLOUR_TEXT_REGION 109 48 114 48 51
STRAND 126 48 130
COLOUR_TEXT_REGION 126 48 130 48 51
STRAND 135 48 139
COLOUR_TEXT_REGION 135 48 139 48 51
STRAND 144 48 150
COLOUR_TEXT_REGION 144 48 150 48 51
STRAND 157 48 162
COLOUR_TEXT_REGION 157 48 162 48 51
STRAND 166 48 169
COLOUR_TEXT_REGION 166 48 169 48 51
STRAND 182 48 187
COLOUR_TEXT_REGION 182 48 187 48 51
STRAND 193 48 196
COLOUR_TEXT_REGION 193 48 196 48 51