QUERY : TTANTHCGADFCTWWHDSGEINTQTPVQPGNVRQSHKYSVQVSLAGTNNFHDSFVYESIPRNGNGRIYAPTDPPNSNTLDSSVDDGISIEPSIGLNMAWSQFEYSHDVDVKILATDGSSLGSPSDVVIRPVSISYAISQSDDGGIVIRVPADANGRKFSVEFKTDLYTFLSDGNEYVTSGGSVVGVEPTNALVIFASPF : QUERY
UniRef90_R4UBH6 : --NHTVCNSQLCTWWHDNGEINTASMVQLGNVRQSHKYLVQVSIAGVNDFYDSFAYESIPRNGRGRIYSPWDPPNSDTLGSDVDDGITIETSAGINMAWSQFEYSTGVDVKILTRDGSRLPDPSGVKIRPTAISYDIRSSSDGGIVIRVPHDPNGRRFSVEFDNDLYTYRSDGSRYVSSGGSIVGVEPRNALVIFASPF : UniRef90_R4UBH6
UniRef90_U7PPJ2 : --NVTHCGTDFCTWWHTTGEINTWTPVKPGNVRQSHRYSVEVSPAGANTFYDSFVYEAIPRNGNGRIYAPTDAPYSNTLSATVDDGISIEPSIGLNMAWSQFEYSHDVDVRITTIDGSTLGGAGSVTIRPTADNLAMRDGGDGSVIIRVPAATNGYRFSVEFANDLYSFRSNGSDYVTSGGSVVGVEPTNALVIFASPF : UniRef90_U7PPJ2
UniRef90_Q2HPE6 : --NRTVCGSQLCTWWHDSGEINTGTPVQAGNVRQSRKYSVHVSLADRNQFYDSFVYESIPRNGNGRIYSPTDPPNSNTLNSSIDDGISIEPSLGINMAWSQFEYRRDVDIKITTIDGSILDGPLDIVIRPTSVKYSVKRC-VGGIIIRVPYDPNGRKFSVELKSDLYSYLSDGSQYVTSGGSVVGVEPKNALVIFASPF : UniRef90_Q2HPE6
UniRef90_C9SIB0 : --ASGACVPGVKTWWHDKSTIDIQRPAAPDEVRRSRRYEVSVSAASTGRFQRSFVYESIPRNGNGKMFDPAQTGKEYNL--TDGDGVTVEIDAGISMAWTQFQYRRDVDVRIISSDGSALGPASNIVIRPVDLGFKVRSPQPDTVVIRVPYQKSGARFSVEFQDDLYTFRSNGTDYVAEGGVIVSEEPKNALLIFASPM : UniRef90_C9SIB0
UniRef90_F9FZQ7 : --------SDVTTWWHDSSVINTNASVAADEVRRSRRYKVSISLAGEDDFHRSFVYESIPRNGNGKMLDPAQPEKEY--DFADGDGITIEADEGISMAWTQFIYRKDIDVRIVTTDGSSIGPASNVVIRPADLGFKVKSPKDNTVLIRVPFQKSGARFSVEFRDDLVTYRSNGTDYVNDGGVIVSEEPKNGLIIFASP- : UniRef90_F9FZQ7
UniRef90_C7ZIX6 : -AAAESSVPGLTTWWHDKFSVNTNKATAPDEVRRSRRYNVFVSPAGEDRFQRSFVYESIPRNGNGKMFDPAQPGQEYNL--TDGDGITVEVDVGINMAWSQFQYGRDVDVRIVSSDGSPLGPASNVVIRPVDLDLVAISPSADTIEIRIPYRDSGNRFSVEFQNDLYTYRSDGTEYVSEGGIVVSEEPRNALLIFASPI : UniRef90_C7ZIX6
UniRef90_W6Q232 : STPNTHCGSDFCTWWHDTAEINTATAVEAGNVRQSHQYLVQVAAAGSNTSYDSFVYESIPRNGNGKIQTPGDTSDT----FSGDDGISIEIDAGINMAWSQFEYSEDVDVTISRRDGQDVG--MDLIIRPSTIAYELSYADN-AVIIRVPADENGRKFSVEFGNDLYTFRSDGEAYTTDGGEVVGIEPINALLIFASPF : UniRef90_W6Q232
UniRef90_Q9WXI3 : -APVTADVGNLHTWWHDNAVYNTDSPTENGEVRRSSFYDVQVAQAQPDKFFDSFAYMSIPRSGKGKV------------GYTKEDGAEFSSEANLSMSWSSFEYAKDVWVDVSLKTGQTISSADEVQIRPSSYDFEKKLVDEDTIRIKVPYSDAGYRFSVEFDPQLYTSYNDKLTTVAEGNRPIHTEPMNSMMIFAEP- : UniRef90_Q9WXI3
UniRef90_UPI00046595C4 : -AAQTADNSRLHTWWHENYEENDQFPVADNQVRRSTFYDVKVSTASPGSKFDSFTYMNIPRSGKGKIGYDGET-----------DGAEFADSANLTMSWNSFLYSEDVWVEVSLRTGQTVGSVDEVTIRPENLNFQKEMVDSSTIRIRVPYSDKGYRFSVEFDNQLYTAYNDLTEYGGGNNRAIHTEPRNALMIFSEP- : UniRef90_UPI00046595C4
UniRef90_W3WLM9 : -------TDQLHTWWHETGVVNTTSRVREDQVRMSRRYRVQVRPFQQDKFFDSFVYEAIPRSGNGKIATPLDHPDPKPFIHKDGDGITFEEEAFINMAWSQFLYKCKVQVRISSSDAC-IRLGTDVTIRPIHNLQTETEKDTGALLITIPWQEGGFRFSVEFKDDLIQYRSNGKTYVYEDHSLVGEEPKNALLIFASPF : UniRef90_W3WLM9
UniRef90_M7TN84 : TANNTASLDTLKTWWQPTGEINTRTPVQDGNVRQSHLYTVQVATAASASYYDSFVYETIPRNGNGKICTPGDL----TSLCDTDDQISIEPDVGITMAWTQFLYQTDVVVKVERNNGAAIT-AENVIIRPTNLEFKIEVVD-GAVLITVPYNANGFRFSVELQDDIWVYRNDGESYVTSDMPIVGKEPRNALLIFSSPF : UniRef90_M7TN84
UniRef90_I3IE21 : SAGVTADTAGLKTWVHNNYEINATGPVADNKVRASSFYEVRVSVADPENYFDSFTYMSIPRSGRAKLYSDADG------DYGV-DGAEFADQADLSMSWSSFLFGEDVWVEVSLRNGETFSSVSDVTIRPTVLNFVKEKMDADTIRIKVPYSSNGRRFSVEFNHQLYTAYNDKTTTVAAGNYEVHTEPKNALLIFAEPI : UniRef90_I3IE21
UniRef90_A9UKG4 : -TGFTATGPGLRTWWHNNYEYNPTSPTQNGTVRRSSFYEVQVATAAPGTRYDSFAYMSIPRSGKGKT------------GYTEPDGAEFSSSANLSMSWSSFEYSTDVWVDVKLTTGQTITSVDQVTIRPSKYTFEKELVNPSTIRVKVPYSSTGYRLSVEFAPQLFTAYNDLTETGGGDHRAIHTEPRNSMMIFAEP- : UniRef90_A9UKG4
UniRef90_W3WRZ5 : --NVTADLSSLQTWWHENGEINYETPVQEGNVRQSHVYSVKSTVDTSNTYYNTFVYETIPRNGQGNIIIPGDPTSTTT----ADDAVTIEADIWITMAWTQFLYSSDTWVKVTRR-GDNPSVASNVVIRPTNLDLTVTDDGAGNVYILVPYSAQGLRFSVEFKDNLYDYHSDGPNYVTDKNPIMGTEPHDALLIFASPF : UniRef90_W3WRZ5
UniRef90_G9MDL9 : ---QTVSTRNLHTWWQEGGVKDSRIRIYENKVRQSHAYRVQVRGAADAPWYDSFVYESIPRGGNGFFKTPVDSPNPQRFTCSDGDGIELEHKANLSMAWSQFEYDDDVEVKITPCNGVKL---NEVTIRPTALHLEAKALSD-AVVIRVPRNPDGFKFSVEFRDDIIEYFSDGTQYVKDGRHLVGREPRNALLIFASPF : UniRef90_G9MDL9
UniRef90_E6K0B3 : TKPKVADTPTLKTWWHAGAFKSAGPAIAAKQVRQSPFYSARVIEAGPRKVYDSFTYLSVPRNGKG---------NDRKPGYTSTDGAEFASDAHMTMSWTSFEYSEDTWVNVSLTTGQRVSSVDQVTIRPRSLAFKKKLVDDHTVAIKVPASRTGYRFSVEFAPQVRMVYADAKDGLTEGKRRVESEPQNAMLVFAQPL : UniRef90_E6K0B3
UniRef90_W5IHL7 : ---KNADSSYLKTWWHTNGVRNSSGAIDDNQVRESPFYSVSVTPYKSEKQYRSFTYLSIPRNGKGKQ------------GYSKTDGAEFASEATMTMSWTSFEYTQDTWVRVSLDTGQTIKSADEVTIRPTTLKFEKKLVDNHTVAIKVPASPEGYRFSVEFAPQVYASSSSGLTTQSKGTMKVESEPHNAMMVFAQPM : UniRef90_W5IHL7
UniRef90_I3IE23 : ----NVIAADLHTWWHDEYEINDSSAVADNKVRRSGLYDVRVAVAAPTALKNAFVYMSIPRSGRSKA------------GYTHADGAEFADIANLSMSWSSFLYTGDVWVEVDLKDGASINNLDEIIIRPTSLNFEKQLVDNNTLRIKVPYRAEGYRFSVEFESQQFTSYNDGNLSLNDSGYAIHREPKNALLIFAQP- : UniRef90_I3IE23
UniRef90_L1PK56 : ----------IRTWWHENGVKDAEKPLANDEVRQSPFYSVSVSVDGTDSDNSSFTYMSIPRNGN---------PMRSDLN---DDGAKFQADNHVTMSWSSFEYDTDVYVDVTLQTGAKLSDVNQVTVRPAKANIEKKLLDDKTVRLYIPQNNDGYRLSVEFAPDVYRYQGGLTLEGGEGHEYVGTEPKNSMLLFAQPW : UniRef90_L1PK56
UniRef90_U1RWJ0 : ---------GIRTWTHDKASKATEGTVAPEEVRQSPFYSVRVAPSAPDQTQDSFTYLSVPRNGKDK------------ESYTAEDGAGYAATTKATMSWSTFEYSKEVVVYVTLLNGASVKDPSDITIRPTSIKVEAIENEGRTAKIRVPYSQNGYRLSVEFPSQTVSTYADKDGVLSDSRTFLESEPRNAMLLFAQP- : UniRef90_U1RWJ0
UniRef90_O00105 : ----TANNSQLLTWWHNTGEINTQTPVADGNVRQSGLYSVKVTPASSSLYYDSFVYLAIPGNG-------------------MSDQLQYTQGYNQTQAWTSFLYSHDATVKIS-RNGSSANS--NVVIRPTSLNFPVR-YDNQSVYITVPYSPTGYRFSVEFDDDLISLAPSGA-----------RQPENALLIFASPF : UniRef90_O00105
UniRef90_UPI00036E0F13 : --------------------------------DRSSTYTVSVEGKKPS------VYRTAPK--------------PRTCPTTDCDGGDHARAENRSFNWASFWFPAGTSPTVTVTRTAAAGAVTDIKVRGTG-DFTVVSKSLTARQIKIRVNKPKAKLPVEFVDNRY----DGLRQL----------PLDGMLLFAD-- : UniRef90_UPI00036E0F13
UniRef90_M5UGT4 : ---------------HINCSAEVETYPGPDGIDASDQYSVTVLQDGQR--YPAFVYKS-----------------TTTFHRDKRD---------RTTSWTTFSFSKPIQVEVTKLKGR----AKSCVIRPSRQSIQARVRDNATFIIDKPQ-----KLSIEFDNDI----------------------THSMLLFADPI : UniRef90_M5UGT4
UniRef90_W7QPJ7 : ---------------------------------------------------------------------PPKPSMSPKIKPGTKDGADSYRNTQRSFAWSQFSFSRHVDVEITKL--ADAGTVTDIIVRPSSLSYQVLEKDLDKKTLKIRVLQSNRKLSIEFKDNRYAPLKDI--------------PLDALLLFAD-- : UniRef90_W7QPJ7
UniRef90_W7QLH0 : ----TGCKTNITT---NADSSNTQQPSAL-QVEHVVTYAYQDLPDGSSKF-------SIDVEGQSVVLTPPPAEMAINIKPGSQDGAKSYRQTQRSFSWGQFSFDGPVNVQVSKLD-ENSGDVRDIIIRPSGIAYKVVNKDLANRTVQLQILQSNRKLSVEFVDDRYAVEKDL--------------PLDALLIFAD-- : UniRef90_W7QLH0
UniRef90_A0A017SCC7 : ------------------------------------------------------------------------------------------------MAWLQFLCSRDVVVNVTRLDDKNV-SAKDVAIRPPNLQIEVTQGSSDFISVPYSLDTHGVRFSVEFADDIWEYRNAGDYYVPSYNVLVGREPPSALLIFASLF : UniRef90_A0A017SCC7
UniRef90_V4A1S7 : -------------------------PVSPGVV-SSDKFSVEVKQ-GSSAFQGSFVY--ISHSNNRVGQSPSVKPN-------------------RTVSWTSFGFTGDVNVNVIT-----VKDFKECTVRPESYGIPCTRLREKTASFEMTSNTQ--KISVEFDYDYGSLKSDIV---------------DKLLIFANP- : UniRef90_V4A1S7
UniRef90_V3ZZP6 : -------------------------PVATGYI-ASDKFSVQIKQ-GSEAFQDSFVY--ISHSNNRVGQDYRVRPD-------------------RTLSWSSFGFTCPVLVIVVTNR-----DFNECLVRPKSYGITCSKTGEKAASFEMTSNTQ--KISVEFDYDYGGLHSDIV---------------DKLLIFANP- : UniRef90_V3ZZP6
UniRef90_R5RXH3 : -------------------------------------YSVSVLQ-GDGQWKEAFVHDAL----------VSDAPNHHTQIWNDWDNSKRLRD---TASFVNFDFDSPVTIRVKKLSG----SYSSVKVRPTLSGIVPVAVDANTIELTIP-SWQARKFSIEYDGDRF-------------------------------- : UniRef90_R5RXH3
UniRef90_UPI00031DD7A6 : ------------------------------GVPRSTIYSVTLIQGDER--------ETIP-----VFQSSCPVYQAGYMDMTPTDSYPLGIFKGRSISWANFSFRGRVEVEVRVLDRQKVPFFGGVKVLPSRYGVT---PSVEGDVVRFTLTKPG-QCSVEIGFNGY---------------------KNGLMLFADPM : UniRef90_UPI00031DD7A6
UniRef90_UPI00035C665A : --------------------------------KQSDEYVVEVKRSGDTNYKTCFVYKSDNSFVNTYFGASTAKPGPKRP--------------QASAAFTNFSFAETVDVRIVSK-----IPVSSVKIRPLNLGIDFKQSGN---VITFSMATPK-KLSVEIND----------------------------------- : UniRef90_UPI00035C665A
UniRef90_R6EA08 : --------------------------------RHNDDYTVKVRQAGEKDWVDLFEY-----NVKVDMDTKSDATM------------------------VQFDFSGKVEVLVQKNNG----DIRSAVVRPLSKGIQ-PEIDGNFLLFTL---DKPQKLSVEFNGDR----------------------LNNLHVFANPI : UniRef90_R6EA08
UniRef90_R5NKL9 : -------------------------------------------------------------------------------------------------SFAEFEMGSPVVVRVKRTDAWDGNGKMQVKVKPSSRGIACRQVDARTVEFTL-HRPEF--LSVEFKQNLHIFANDAETYTGEEPDAINWKGKNAQDVFKQ-- : UniRef90_R5NKL9
UniRef90_UPI000380AC6E : -------------------------------------------LADSPDVNVSTVWETLSQNGVEKVFQSTCPVYDPSKGMIGSDRTALELVAGRTISWANFSFDGEVTVTARILDPSRVPMSSSVAVYPSR---KHVSPSLSGQSVTFTLTEPG-QYSVE----------------------VGAEGRNGLMIFANPL : UniRef90_UPI000380AC6E
: 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181-------191------ :
OrigSeq : TTANTHCGADFCTWWHDSGEINTQTPVQPGNVRQSHKYSVQVSLAGTNNFHDSFVYESIPRNGNGRIYAPTDPPNSNTLDSSVDDGISIEPSIGLNMAWSQFEYSHDVDVKILATDGSSLGSPSDVVIRPVSISYAISQSDDGGIVIRVPADANGRKFSVEFKTDLYTFLSDGNEYVTSGGSVVGVEPTNALVIFASPF : OrigSeq
Jnet : -----------EEEE----EE---------------EEEEEEEE---------EEEEE------EEEE-------------------EEEE----EEEEE--E-----EEEEEE-----------EEEEE----EEEEE----EEEEEEEE-----EEEEEE---EEEE------------EEEEE-------E----- : Jnet
jhmm : -----------EEE-----EE---------------EEEEEEEE---------EEEEE------EEEEE------------------EEEH---EEEEEE-------EEEEEEE-----------EEEE-----EEEEE----EEEEEEEE-----EEEEE----EEEEE-----------EEEEE------------- : jhmm
jpssm : ----------EEEEE----EE-----------E----EEEEEEE----------EEEEE-------E---------------------EEE----EEEE---EE----EEEEEE-----------EEEEE----EEEEE----EEEEEEE------EEEEEE---EEEE------------EEEEEE-----EEEE--- : jpssm
Lupas 14 : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21 : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28 : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28
Jnet_25 : -----B----B-BBBB--B-------B----B--B--B-B-B-------BB-BBBBBBBB--B---B--B--------B-B---BBB-BB--B-BBBBBBBB-B---B-B-BB------B--B--BBBBB--B-B-B-------B-B-BBB----B-BBBBB---BB-BB--B---B----BBBB--B--BBBBBB-B- : Jnet_25
Jnet_5 : ----------B-B-B------------------------B------------BBBB------------------------------B---------BBBB-B-------B-B-------------B-B-B----------------B-B--------BBB-B------B--------------B-------BBBB---- : Jnet_5
Jnet_0 : -------------------------------------------------------------------------------------------------B-B----------------------------------------------B--------------------------------------------B------- : Jnet_0
Jnet Rel : 8988777775178814773442567776665231570489988437777777601666147777141216777667777667777752551367025522432037805899843677777777358981488569986488558999861788846899805856886167777677773488872578740013699 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.