SILENT_MODE BLOCK_FILE jp_X77TRMm.concise.blc MAX_NSEQ 280 MAX_INPUT_LEN 282 OUTPUT_FILE jp_X77TRMm.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 220 269 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 270 220 279 H SPACE SUB_CHARS 1 270 220 279 E SPACE SUB_CHARS 1 270 220 279 - SPACE STRAND 4 273 9 COLOUR_TEXT_REGION 4 273 9 273 51 STRAND 27 273 30 COLOUR_TEXT_REGION 27 273 30 273 51 STRAND 128 273 132 COLOUR_TEXT_REGION 128 273 132 273 51 STRAND 136 273 138 COLOUR_TEXT_REGION 136 273 138 273 51 STRAND 171 273 174 COLOUR_TEXT_REGION 171 273 174 273 51 STRAND 192 273 195 COLOUR_TEXT_REGION 192 273 195 273 51 STRAND 200 273 207 COLOUR_TEXT_REGION 200 273 207 273 51 STRAND 213 273 218 COLOUR_TEXT_REGION 213 273 218 273 51 HELIX 39 273 52 COLOUR_TEXT_REGION 39 273 52 273 50 HELIX 60 273 73 COLOUR_TEXT_REGION 60 273 73 273 50 HELIX 94 273 125 COLOUR_TEXT_REGION 94 273 125 273 50 STRAND 4 278 9 COLOUR_TEXT_REGION 4 278 9 278 51 STRAND 27 278 30 COLOUR_TEXT_REGION 27 278 30 278 51 STRAND 34 278 35 COLOUR_TEXT_REGION 34 278 35 278 51 STRAND 128 278 132 COLOUR_TEXT_REGION 128 278 132 278 51 STRAND 137 278 138 COLOUR_TEXT_REGION 137 278 138 278 51 STRAND 171 278 174 COLOUR_TEXT_REGION 171 278 174 278 51 STRAND 193 278 195 COLOUR_TEXT_REGION 193 278 195 278 51 STRAND 199 278 208 COLOUR_TEXT_REGION 199 278 208 278 51 STRAND 213 278 218 COLOUR_TEXT_REGION 213 278 218 278 51 HELIX 39 278 51 COLOUR_TEXT_REGION 39 278 51 278 50 HELIX 60 278 72 COLOUR_TEXT_REGION 60 278 72 278 50 HELIX 94 278 109 COLOUR_TEXT_REGION 94 278 109 278 50 HELIX 113 278 125 COLOUR_TEXT_REGION 113 278 125 278 50 STRAND 5 279 10 COLOUR_TEXT_REGION 5 279 10 279 51 STRAND 14 279 14 COLOUR_TEXT_REGION 14 279 14 279 51 STRAND 27 279 30 COLOUR_TEXT_REGION 27 279 30 279 51 STRAND 129 279 133 COLOUR_TEXT_REGION 129 279 133 279 51 STRAND 135 279 138 COLOUR_TEXT_REGION 135 279 138 279 51 STRAND 149 279 150 COLOUR_TEXT_REGION 149 279 150 279 51 STRAND 171 279 174 COLOUR_TEXT_REGION 171 279 174 279 51 STRAND 192 279 195 COLOUR_TEXT_REGION 192 279 195 279 51 STRAND 200 279 206 COLOUR_TEXT_REGION 200 279 206 279 51 STRAND 213 279 218 COLOUR_TEXT_REGION 213 279 218 279 51 HELIX 39 279 52 COLOUR_TEXT_REGION 39 279 52 279 50 HELIX 59 279 75 COLOUR_TEXT_REGION 59 279 75 279 50 HELIX 93 279 124 COLOUR_TEXT_REGION 93 279 124 279 50