SILENT_MODE
BLOCK_FILE jp_Onr3DTs.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_Onr3DTs.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 74 15   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 16 74 25 H SPACE
SUB_CHARS 1 16 74 25 E SPACE
SUB_CHARS 1 16 74 25 - SPACE
STRAND 11 19 15
COLOUR_TEXT_REGION 11 19 15 19 51
STRAND 20 19 24
COLOUR_TEXT_REGION 20 19 24 19 51
STRAND 31 19 38
COLOUR_TEXT_REGION 31 19 38 19 51
STRAND 45 19 48
COLOUR_TEXT_REGION 45 19 48 19 51
STRAND 53 19 58
COLOUR_TEXT_REGION 53 19 58 19 51
HELIX 67 19 72
COLOUR_TEXT_REGION 67 19 72 19 50
STRAND 11 24 16
COLOUR_TEXT_REGION 11 24 16 24 51
STRAND 20 24 24
COLOUR_TEXT_REGION 20 24 24 24 51
STRAND 31 24 38
COLOUR_TEXT_REGION 31 24 38 24 51
STRAND 46 24 48
COLOUR_TEXT_REGION 46 24 48 24 51
STRAND 53 24 57
COLOUR_TEXT_REGION 53 24 57 24 51
HELIX 67 24 72
COLOUR_TEXT_REGION 67 24 72 24 50
STRAND 12 25 14
COLOUR_TEXT_REGION 12 25 14 25 51
STRAND 20 25 23
COLOUR_TEXT_REGION 20 25 23 25 51
STRAND 30 25 38
COLOUR_TEXT_REGION 30 25 38 25 51
STRAND 44 25 48
COLOUR_TEXT_REGION 44 25 48 25 51
STRAND 53 25 58
COLOUR_TEXT_REGION 53 25 58 25 51
STRAND 70 25 71
COLOUR_TEXT_REGION 70 25 71 25 51
HELIX 9 25 11
COLOUR_TEXT_REGION 9 25 11 25 50