QUERY                  : DTTVSEPAPSCVTLYQSWRYSQADNGCAETVTVKVVYEDDTEGLCYAVAPGQITTVGDGYIGSHGHARYLARCL : QUERY 
UniRef90_P20596        : -SDASEPAPACVVMYESWRYTTAANNCADTVSVSVAYQDGATGPCATLPPGAVTTVGEGYLGEHGHPDHLALC- : UniRef90_P20596
UniRef90_UPI0003A1BCA7 : --TAPVPAPECVTHSASWRYTFVTNGCEGAQHLTLRYLDGGEVPCRTVAPGATATFGYGTQGN----------- : UniRef90_UPI0003A1BCA7
UniRef90_UPI0003C75891 : -----SAAPECVQYSQSWRYTDVFNGCGETVAVTVEYTNGQWAPCRVIQPGQSATFGYGTDGNY---------- : UniRef90_UPI0003C75891
UniRef90_Q53356        : ----GAPAPACVESFQSWRYTDVHNGCSETVSVTVEYTNGQWAPCVTIQPDGWATFGYGTNSNY---------- : UniRef90_Q53356
UniRef90_V6UAI5        : -----APAPECVVYHQGWRYTDVVNGCAIGVAVTVEYTNGQEAPCRILGPGERATFGYGTNGNY---------- : UniRef90_V6UAI5
UniRef90_M4GGT3        : --------PACVHINSDWRYTFVTNDCSSAYDVTVVYRDGANVPCRVASPGDIISFGYGTQGN----------- : UniRef90_M4GGT3
UniRef90_P20078        : -------APACVHFTADWRYTFVTNDCSIDYSVTVAYGDGTDVPCRSANPGDILTFGYGTRGN----------- : UniRef90_P20078
UniRef90_B3CJE8        : -----SAAPECVTFSADWRYTFVTNNCPDTHTLKVVYRDGTDVPSRVAPPGAMVTFGHGTTGN----------- : UniRef90_B3CJE8
UniRef90_D6A1J4        : -------APACVEVGADWRYAFVTNTCSSTYTLTVAYSDGREVPCRVVHPGDRVTFGHGTRGD----------- : UniRef90_D6A1J4
UniRef90_UPI0004770F00 : -----EPAPECVHYAATWRYTHVTNACDTAYRLTVEYTDGTGVPCREAQPGATVTFGYGPGGN----------- : UniRef90_UPI0004770F00
UniRef90_G7HXP5        : -TLAAVPAPNCIVARAEKGFVQVYNNCSDPQRVKVVLAFGPDTQCKSIQPGTRSNVG----------------- : UniRef90_G7HXP5

                       : 1---------11--------21--------31--------41--------51--------61--------71-- :
OrigSeq                : DTTVSEPAPSCVTLYQSWRYSQADNGCAETVTVKVVYEDDTEGLCYAVAPGQITTVGDGYIGSHGHARYLARCL : OrigSeq

Jnet                   : ----------EEEEE----EEEEE------EEEEEEEE------EEEE----EEEEEE--------HHHHHH-- : Jnet
jhmm                   : ----------EEEEEE---EEEEE------EEEEEEEE-------EEE----EEEEE---------HHHHHH-- : jhmm
jpssm                  : --------HHHEEE-----EEEE------EEEEEEEEE-----EEEEE----EEEEEE-----------EE--- : jpssm

Lupas 14               : -------------------------------------------------------------------------- : Lupas 14
Lupas 21               : -------------------------------------------------------------------------- : Lupas 21
Lupas 28               : -------------------------------------------------------------------------- : Lupas 28

Jnet_25                : ---B---BB-BB-BB--B-BBBB-B-B--BB-BBBBB-----BBB-BB-B---BBBBBB--B-BBBB-BBB-B- : Jnet_25
Jnet_5                 : -------B--BB----------B---------B-B-B-------B--B-------BB------------BB--- : Jnet_5
Jnet_0                 : ----------------------------------B--------------------------------------- : Jnet_0
Jnet Rel               : 99888765312112228845774357886178888872588852388648855899804677776523332079 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.