QUERY           : ASRSVIRSIIKSSRLEEDRKRYLMTLLDDIKGANDLAKFHQMLVKIIMKHHHH : QUERY 
UniRef90_Q03335 : ASRSVIRSIIKSSHLGEDRKDYLMSLLNDIQGSKDLAQFHQMLVKIL------ : UniRef90_Q03335
UniRef90_B0ZCN3 : SSRNVIRSIIKSSKLNIDHKDYLLDLLNDVKGSKDLKEFHKMLTAILAKH--- : UniRef90_B0ZCN3
UniRef90_G3EGV9 : -SRSVLRSMIKSSNLESEHKRSMIGLLNDVKSGKDLGEFYQMVKKII------ : UniRef90_G3EGV9
UniRef90_P35939 : -SKAVIASLIRSSKVDQSHKQNMLSLLKNIKGDDNLNEFYQMIKSI------- : UniRef90_P35939
UniRef90_I0B1R8 : ASTSTIKSIIRSSNLDQDLKTKLLTILSQIRGTENVKEFYEKVMILI------ : UniRef90_I0B1R8

                : 1---------11--------21--------31--------41--------51- :
OrigSeq         : ASRSVIRSIIKSSRLEEDRKRYLMTLLDDIKGANDLAKFHQMLVKIIMKHHHH : OrigSeq

Jnet            : --HHHHHHHHH-----HHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---- : Jnet
jhmm            : -HHHHHHHHHH-----HHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---- : jhmm
jpssm           : --HHHHHHHHH-----HHHHHHHHHHHHH-----HHHHHHHHHHHHHHH---- : jpssm

Lupas 14        : ----------------------------------------------------- : Lupas 14
Lupas 21        : ----------------------------------------------------- : Lupas 21
Lupas 28        : ----------------------------------------------------- : Lupas 28

Jnet_25         : ----BB-BBB-BB-B---B---BB-BB--B-B---B--BB-BBB-BBB----- : Jnet_25
Jnet_5          : -----B--BB------------B--BB--B--------B---B--BB------ : Jnet_5
Jnet_0          : ------------------------------------------B---------- : Jnet_0
Jnet Rel        : 93699999975378861799999999874378713899999999999743899 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.