SILENT_MODE
BLOCK_FILE jp_o3odCrY.concise.blc
MAX_NSEQ 1011
MAX_INPUT_LEN 1013
OUTPUT_FILE jp_o3odCrY.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 74 1000   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 1001 74 1010 H SPACE
SUB_CHARS 1 1001 74 1010 E SPACE
SUB_CHARS 1 1001 74 1010 - SPACE
HELIX 3 1004 24
COLOUR_TEXT_REGION 3 1004 24 1004 50
HELIX 29 1004 40
COLOUR_TEXT_REGION 29 1004 40 1004 50
HELIX 45 1004 56
COLOUR_TEXT_REGION 45 1004 56 1004 50
HELIX 62 1004 72
COLOUR_TEXT_REGION 62 1004 72 1004 50
HELIX 2 1009 24
COLOUR_TEXT_REGION 2 1009 24 1009 50
HELIX 29 1009 41
COLOUR_TEXT_REGION 29 1009 41 1009 50
HELIX 45 1009 56
COLOUR_TEXT_REGION 45 1009 56 1009 50
HELIX 62 1009 72
COLOUR_TEXT_REGION 62 1009 72 1009 50
HELIX 3 1010 24
COLOUR_TEXT_REGION 3 1010 24 1010 50
HELIX 30 1010 40
COLOUR_TEXT_REGION 30 1010 40 1010 50
HELIX 45 1010 58
COLOUR_TEXT_REGION 45 1010 58 1010 50
HELIX 62 1010 72
COLOUR_TEXT_REGION 62 1010 72 1010 50