SILENT_MODE BLOCK_FILE jp_EasZJ_m.concise.blc MAX_NSEQ 132 MAX_INPUT_LEN 134 OUTPUT_FILE jp_EasZJ_m.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 144 121 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 122 144 131 H SPACE SUB_CHARS 1 122 144 131 E SPACE SUB_CHARS 1 122 144 131 - SPACE STRAND 4 125 9 COLOUR_TEXT_REGION 4 125 9 125 51 STRAND 15 125 15 COLOUR_TEXT_REGION 15 125 15 125 51 STRAND 18 125 24 COLOUR_TEXT_REGION 18 125 24 125 51 STRAND 29 125 34 COLOUR_TEXT_REGION 29 125 34 125 51 STRAND 43 125 50 COLOUR_TEXT_REGION 43 125 50 125 51 STRAND 85 125 90 COLOUR_TEXT_REGION 85 125 90 125 51 STRAND 94 125 99 COLOUR_TEXT_REGION 94 125 99 125 51 STRAND 105 125 107 COLOUR_TEXT_REGION 105 125 107 125 51 HELIX 52 125 64 COLOUR_TEXT_REGION 52 125 64 125 50 HELIX 117 125 139 COLOUR_TEXT_REGION 117 125 139 125 50 STRAND 3 130 9 COLOUR_TEXT_REGION 3 130 9 130 51 STRAND 14 130 15 COLOUR_TEXT_REGION 14 130 15 130 51 STRAND 18 130 24 COLOUR_TEXT_REGION 18 130 24 130 51 STRAND 30 130 34 COLOUR_TEXT_REGION 30 130 34 130 51 STRAND 44 130 49 COLOUR_TEXT_REGION 44 130 49 130 51 STRAND 85 130 90 COLOUR_TEXT_REGION 85 130 90 130 51 STRAND 94 130 99 COLOUR_TEXT_REGION 94 130 99 130 51 STRAND 106 130 107 COLOUR_TEXT_REGION 106 130 107 130 51 HELIX 41 130 43 COLOUR_TEXT_REGION 41 130 43 130 50 HELIX 52 130 63 COLOUR_TEXT_REGION 52 130 63 130 50 HELIX 116 130 138 COLOUR_TEXT_REGION 116 130 138 130 50 STRAND 4 131 9 COLOUR_TEXT_REGION 4 131 9 131 51 STRAND 17 131 23 COLOUR_TEXT_REGION 17 131 23 131 51 STRAND 29 131 34 COLOUR_TEXT_REGION 29 131 34 131 51 STRAND 43 131 45 COLOUR_TEXT_REGION 43 131 45 131 51 STRAND 48 131 50 COLOUR_TEXT_REGION 48 131 50 131 51 STRAND 84 131 90 COLOUR_TEXT_REGION 84 131 90 131 51 STRAND 94 131 99 COLOUR_TEXT_REGION 94 131 99 131 51 STRAND 105 131 107 COLOUR_TEXT_REGION 105 131 107 131 51 STRAND 118 131 121 COLOUR_TEXT_REGION 118 131 121 131 51 STRAND 140 131 140 COLOUR_TEXT_REGION 140 131 140 131 51 HELIX 52 131 64 COLOUR_TEXT_REGION 52 131 64 131 50 HELIX 66 131 69 COLOUR_TEXT_REGION 66 131 69 131 50 HELIX 122 131 139 COLOUR_TEXT_REGION 122 131 139 131 50