SILENT_MODE
BLOCK_FILE jp_hSwoTm_.concise.blc
MAX_NSEQ 361
MAX_INPUT_LEN 363
OUTPUT_FILE jp_hSwoTm_.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 90 350   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 351 90 360 H SPACE
SUB_CHARS 1 351 90 360 E SPACE
SUB_CHARS 1 351 90 360 - SPACE
STRAND 4 354 10
COLOUR_TEXT_REGION 4 354 10 354 51
STRAND 14 354 18
COLOUR_TEXT_REGION 14 354 18 354 51
STRAND 31 354 34
COLOUR_TEXT_REGION 31 354 34 354 51
STRAND 38 354 39
COLOUR_TEXT_REGION 38 354 39 354 51
STRAND 44 354 46
COLOUR_TEXT_REGION 44 354 46 354 51
STRAND 59 354 62
COLOUR_TEXT_REGION 59 354 62 354 51
STRAND 84 354 86
COLOUR_TEXT_REGION 84 354 86 354 51
HELIX 19 354 22
COLOUR_TEXT_REGION 19 354 22 354 50
HELIX 66 354 72
COLOUR_TEXT_REGION 66 354 72 354 50
STRAND 4 359 10
COLOUR_TEXT_REGION 4 359 10 359 51
STRAND 13 359 18
COLOUR_TEXT_REGION 13 359 18 359 51
STRAND 31 359 34
COLOUR_TEXT_REGION 31 359 34 359 51
STRAND 60 359 62
COLOUR_TEXT_REGION 60 359 62 359 51
STRAND 84 359 84
COLOUR_TEXT_REGION 84 359 84 359 51
HELIX 21 359 21
COLOUR_TEXT_REGION 21 359 21 359 50
HELIX 43 359 46
COLOUR_TEXT_REGION 43 359 46 359 50
HELIX 66 359 72
COLOUR_TEXT_REGION 66 359 72 359 50
STRAND 4 360 10
COLOUR_TEXT_REGION 4 360 10 360 51
STRAND 14 360 17
COLOUR_TEXT_REGION 14 360 17 360 51
STRAND 30 360 34
COLOUR_TEXT_REGION 30 360 34 360 51
STRAND 38 360 39
COLOUR_TEXT_REGION 38 360 39 360 51
STRAND 44 360 47
COLOUR_TEXT_REGION 44 360 47 360 51
STRAND 59 360 62
COLOUR_TEXT_REGION 59 360 62 360 51
STRAND 84 360 86
COLOUR_TEXT_REGION 84 360 86 360 51
HELIX 18 360 23
COLOUR_TEXT_REGION 18 360 23 360 50
HELIX 67 360 72
COLOUR_TEXT_REGION 67 360 72 360 50