SILENT_MODE
BLOCK_FILE jp__slolIH.concise.blc
MAX_NSEQ 1275
MAX_INPUT_LEN 1277
OUTPUT_FILE jp__slolIH.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 126 1264   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 1265 126 1274 H SPACE
SUB_CHARS 1 1265 126 1274 E SPACE
SUB_CHARS 1 1265 126 1274 - SPACE
HELIX 3 1268 11
COLOUR_TEXT_REGION 3 1268 11 1268 50
HELIX 17 1268 40
COLOUR_TEXT_REGION 17 1268 40 1268 50
HELIX 44 1268 67
COLOUR_TEXT_REGION 44 1268 67 1268 50
HELIX 75 1268 95
COLOUR_TEXT_REGION 75 1268 95 1268 50
HELIX 99 1268 123
COLOUR_TEXT_REGION 99 1268 123 1268 50
HELIX 3 1273 11
COLOUR_TEXT_REGION 3 1273 11 1273 50
HELIX 17 1273 40
COLOUR_TEXT_REGION 17 1273 40 1273 50
HELIX 44 1273 67
COLOUR_TEXT_REGION 44 1273 67 1273 50
HELIX 75 1273 95
COLOUR_TEXT_REGION 75 1273 95 1273 50
HELIX 99 1273 123
COLOUR_TEXT_REGION 99 1273 123 1273 50
HELIX 3 1274 11
COLOUR_TEXT_REGION 3 1274 11 1274 50
HELIX 17 1274 41
COLOUR_TEXT_REGION 17 1274 41 1274 50
HELIX 44 1274 67
COLOUR_TEXT_REGION 44 1274 67 1274 50
HELIX 76 1274 95
COLOUR_TEXT_REGION 76 1274 95 1274 50
HELIX 99 1274 123
COLOUR_TEXT_REGION 99 1274 123 1274 50