SILENT_MODE
BLOCK_FILE jp_W4uUj71.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_W4uUj71.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 114 31   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 32 114 41 H SPACE
SUB_CHARS 1 32 114 41 E SPACE
SUB_CHARS 1 32 114 41 - SPACE
STRAND 16 35 18
COLOUR_TEXT_REGION 16 35 18 35 51
STRAND 36 35 38
COLOUR_TEXT_REGION 36 35 38 35 51
STRAND 46 35 53
COLOUR_TEXT_REGION 46 35 53 35 51
STRAND 71 35 78
COLOUR_TEXT_REGION 71 35 78 35 51
STRAND 90 35 97
COLOUR_TEXT_REGION 90 35 97 35 51
STRAND 104 35 111
COLOUR_TEXT_REGION 104 35 111 35 51
HELIX 3 35 15
COLOUR_TEXT_REGION 3 35 15 35 50
STRAND 15 40 18
COLOUR_TEXT_REGION 15 40 18 40 51
STRAND 36 40 37
COLOUR_TEXT_REGION 36 40 37 40 51
STRAND 46 40 53
COLOUR_TEXT_REGION 46 40 53 40 51
STRAND 71 40 78
COLOUR_TEXT_REGION 71 40 78 40 51
STRAND 90 40 97
COLOUR_TEXT_REGION 90 40 97 40 51
STRAND 104 40 110
COLOUR_TEXT_REGION 104 40 110 40 51
HELIX 2 40 14
COLOUR_TEXT_REGION 2 40 14 40 50
STRAND 36 41 38
COLOUR_TEXT_REGION 36 41 38 41 51
STRAND 46 41 53
COLOUR_TEXT_REGION 46 41 53 41 51
STRAND 71 41 77
COLOUR_TEXT_REGION 71 41 77 41 51
STRAND 90 41 97
COLOUR_TEXT_REGION 90 41 97 41 51
STRAND 105 41 111
COLOUR_TEXT_REGION 105 41 111 41 51
HELIX 3 41 18
COLOUR_TEXT_REGION 3 41 18 41 50