QUERY : SATSLTFQLAYLVKKIDFDYTPNWGRGTPSSYIDNLTFPKVLTDKKYSYRVVVNGSDLGVESNFAVTPSGGQTINFLQYNKGYGVADTKTIQVFVVIPDTGNSEEYIIAEWKKT : QUERY
UniRef90_C7ZE17 : NDSAVLFYIVASQKKLSFDYTPNWGRGSPNSYIDNLTFPRVLTNKPYKYRVVKAGQDLGVRDSYSVQSDGSQKVNFLEYNAGRGIADTQTIQVYVVDPDNGN--QYLVAQWK-- : UniRef90_C7ZE17
UniRef90_G5CJT8 : TVTALTFRLAWEVKKISFDYTPNWGRGSPSSYIDNLTFPKVLTDKAYTYRVVVSGRDLGVRPSYEVASDGSQKINFLEYHNGYGIADTNTIQVYVVDPSTGD--DFIIAQW--- : UniRef90_G5CJT8
UniRef90_UPI00044145E9 : -DTSVLLALAAQHQRVHFDYTPAWGRGSPASYVDNVTFPHVLDDKAYQYRVIVGDKDLGLRKSYSIQPDGSQKVNFLEYNGGYGIADSNRIRVYVVDPESGN--QYLIAQW--- : UniRef90_UPI00044145E9
UniRef90_UPI0004410AA3 : NSTAITFALVWAEKKLTFDYTPNWVRGHPSSYVDNVVFPKVLTDKKYSYRVLVSGKDLGVRDGYSVQSDGSQKVNFLEYNAGRGIADSNTIQVYAVDPDDGNN--YLVAQ---- : UniRef90_UPI0004410AA3
UniRef90_UPI000462318D : SPSSVLLHFASTLGKVHFDYTPHWGHGNPNTYIDNVTFPRVLTDKQYTYRVCWDETSLGIKNALAVQSDGSQMLDFGQWNCGRGINQMHRIRVYVVDPDNG--SQYLVAQW--- : UniRef90_UPI000462318D
UniRef90_UPI00044111E9 : --TATIFALVWTQTKICFDYTPDWIDGGP-RYINGVVFPKVLTDKNYSYRVE-SDRDYGVRAGYQVQADGSQKVNFLDYNYGLGIEPYRGIKVYVVDPDDGKN--YLVAE---- : UniRef90_UPI00044111E9
UniRef90_UPI000462399F : ---------VATLRKVHFDYTPQWTRDAAQRDITSVTFPCVLVDKRYSYRVVCEDSDLGIRSGTGVYAGGSETVNFLEYNHGRGISQTHRLRVYVVDPDSGN--QYLDAQ---- : UniRef90_UPI000462399F
UniRef90_M2QVQ0 : ----------------------TWKRGNPKVYFDHVTLPGVPTDKAYQYRVVKGDLDLGTRPTYELNKDGSQTINLLEYNKGYGIHEETPINVFVVDPEDGM--ETLVAEWK-- : UniRef90_M2QVQ0
UniRef90_M2PWI3 : --------------------TPTWKRGNPTDYVDHVTLPRVPADKIYQCRVMKSNLDLGIQPTHPLNEDGSQTINLTEYNKRYGIHDTQNIKVYVIDP--ADNTEKPVAKWE-- : UniRef90_M2PWI3
UniRef90_UPI0004412F0B : -----------------------WKRGDSNVHIDRLVIPQPPGGGTYLYRVLKDETDLGVRPTYLLEADGSQVVNLLEYNQGYGIHDSRRVRVFVG-EEGSDGREILIADWRR- : UniRef90_UPI0004412F0B
UniRef90_K5W7W1 : SSSAALFYLVQIMSRVCFDYTPDWQRGNPNSYIDMVKLP-----------------------------------------KGYGVEQGSTIQIYAVDPDDGN--QYLIARW--- : UniRef90_K5W7W1
UniRef90_N1LNI9 : ----------------------QWQ-SSKTGYIDGITFSKVPT-TKVRYQLEIDGKLTDIKPASQVDSQGKRSINFKDFNNGNSIYAGSQISVYAVDERNDNLK---------- : UniRef90_N1LNI9
UniRef90_N1LNI9 : -----------------------WIKGAG-SYINGMYFKPIPAGMEYQYKLQFNGQ-TVTKNRNNLEPNRSIGINFLDYNNGKGLPTGTKIDITAITTNGTN------------ : UniRef90_N1LNI9
UniRef90_J7T287 : -----------EIQKIYKDTTELWGEDSGSTYLNGVLFKNIMGDQVKAYRVVYQGARIVTKPAYAYNKDGSVKVNFLEYNKGMGIPTIDSIRIYAVLTDN---RQVLV------ : UniRef90_J7T287
UniRef90_R8TMK4 : ------------------------------SYMNGIFFKA--PDSKVRYQIAIDNQPTVILPGYPLNPQGVRYINFLEFNAGMGIPLNKQIRVFVVDEKNDNLREQI------- : UniRef90_R8TMK4
UniRef90_R8TMK4 : -----------------------------SSNIEGIKFSKT-SHTKVRYQLFLNNTWKEIRSD-VLNEDG--TIDLTKWNGGNGLPAHQSSFVYAVDEKNDNLK---------- : UniRef90_R8TMK4
UniRef90_J8NYG1 : --------------------------------IDGITFPRIPS-TKVRYQLEIDGKMTDIRSDAVIDASGTRYVNFHKFNNGNGIDMYKRIIVFAVDEKNDNLKAKL------- : UniRef90_J8NYG1
UniRef90_J8NYG1 : -----------------------------NRYINGITYGKVP-LENFKYQLYVNGNWTSILYG-DAKPNGKMYINFLSFNNGRGIVNGFTIQIFTVNINDNNKKTYL------- : UniRef90_J8NYG1
UniRef90_J8NAH2 : -------------------YTPR------SQYVDGVNFSK-MPATKVRYQLEIDGKLTEIRSDAVSDANGNRLVNFLKFNAGHGISYTKNIKVYVVDEKNDNFK---------- : UniRef90_J8NAH2
UniRef90_J8NAH2 : -------------------------------------FPPSILDKITKYKIQHSSIGDVTRNRQNFKHDGRLEINFLDYNNGYGFPLFPVTKVWAV------------------ : UniRef90_J8NAH2
UniRef90_B3ZYH5 : ---------AHTFKSVHSD------KKNGTNYINSINL-NVNKPIKWKYKVKMNGKEVGLKNISEPDANGVIKINFLDLNNGSGFLSTDHIEVYAVKE---------------- : UniRef90_B3ZYH5
UniRef90_C3FB27 : ------------------------------SYTDGWYFERIPDGVVTKYKVSINGGKPVTRDRYNPDKNGRMEVNLLEYNGGRGVKEGSRIEAWAI------------------ : UniRef90_C3FB27
UniRef90_C3DDI0 : -----------EIKEIYKDFSEDWP------WFNDVTFKNIKPLENYQYRVDFWNTNSDIKDSYPVNEDGSVKVNMTEYNEGY------------------------------- : UniRef90_C3DDI0
UniRef90_S5YZN2 : ---------------------EQWNYD-PTRYLTSVTFTRVPSSTI-RYQWKIDGNWGSIKPAPPVDANGKRTINLDSREYTPVIHA----QLYAVDEKNDNLKVK-VAEYDR- : UniRef90_S5YZN2
UniRef90_R8T157 : --------------------------GSPNDYIDQIKFSRIP-NSKVRYQLRYNGTEWKILPDSSVEDDGNQRIHIGQRTGGSGPRANTRVEVYAVDEQDENLKVKI------- : UniRef90_R8T157
UniRef90_N1LYD7 : ---------------VCTNYVYSWDVTN-DAYLNGVYV-DIPTNLNVLYKFKINGIDTTIIKPQLVKNYGRFYVNMLEANLGHGVNKTNNVELYVID----------------- : UniRef90_N1LYD7
UniRef90_B9IX27 : ------FFIVSEIQEAHIIDT--WLKSDGKEHYHGFYFKKMEVDEVISYEVKINGNHFGTSERYSPSEDGRIKVNFFEYNA-YGSNEGDKLQIWAVKKD--------------- : UniRef90_B9IX27
: 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111- :
OrigSeq : SATSLTFQLAYLVKKIDFDYTPNWGRGTPSSYIDNLTFPKVLTDKKYSYRVVVNGSDLGVESNFAVTPSGGQTINFLQYNKGYGVADTKTIQVFVVIPDTGNSEEYIIAEWKKT : OrigSeq
Jnet : --HHHHHHHHHHHHHEEE-----------------EEE-------EEEEEEEE-----------------EEEEEEEE-----------EEEEEEEE------EEEEEEEE--- : Jnet
jhmm : -HHHHHHHHHHHHHEEEE-----------------EE--------EEEEEEEE-----------------EEEEEEEE-----------EEEEEEEE------EEEEEEE---- : jhmm
jpssm : --HHHHHHHHHHHHHHHH-----------------EEE-------EEEEEEEE-----------------EEEEEEE------------EEEEEEEE-------EEEEEEE--- : jpssm
Lupas 14 : ------------------------------------------------------------------------------------------------------------------ : Lupas 14
Lupas 21 : ------------------------------------------------------------------------------------------------------------------ : Lupas 21
Lupas 28 : ------------------------------------------------------------------------------------------------------------------ : Lupas 28
Jnet_25 : ----BBBBBBB-B--BB--BB--B-------BB-BBBB--B-----B-BBBBB----B-B-----B---B--BBBBB-B--BBBB--B--B-BBBBB---------BBB-B--- : Jnet_25
Jnet_5 : ------B-BB----------------------B--B-B----------B-B----------------------B-B--------------B-BBBB----------B------- : Jnet_5
Jnet_0 : -----------------------------------B--------------B-----------------------------------------B-B------------------- : Jnet_0
Jnet Rel : 935899999988653010467777777665343524612678873588988853677776666677777447888740577776545750689886157888701677330189 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.