SILENT_MODE BLOCK_FILE jp_vAKshzF.concise.blc MAX_NSEQ 346 MAX_INPUT_LEN 348 OUTPUT_FILE jp_vAKshzF.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 106 335 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 336 106 345 H SPACE SUB_CHARS 1 336 106 345 E SPACE SUB_CHARS 1 336 106 345 - SPACE STRAND 23 339 28 COLOUR_TEXT_REGION 23 339 28 339 51 STRAND 35 339 36 COLOUR_TEXT_REGION 35 339 36 339 51 STRAND 45 339 49 COLOUR_TEXT_REGION 45 339 49 339 51 STRAND 59 339 60 COLOUR_TEXT_REGION 59 339 60 339 51 STRAND 64 339 70 COLOUR_TEXT_REGION 64 339 70 339 51 STRAND 74 339 80 COLOUR_TEXT_REGION 74 339 80 339 51 STRAND 87 339 89 COLOUR_TEXT_REGION 87 339 89 339 51 STRAND 96 339 99 COLOUR_TEXT_REGION 96 339 99 339 51 HELIX 6 339 17 COLOUR_TEXT_REGION 6 339 17 339 50 HELIX 38 339 40 COLOUR_TEXT_REGION 38 339 40 339 50 HELIX 83 339 86 COLOUR_TEXT_REGION 83 339 86 339 50 STRAND 23 344 28 COLOUR_TEXT_REGION 23 344 28 344 51 STRAND 35 344 36 COLOUR_TEXT_REGION 35 344 36 344 51 STRAND 45 344 49 COLOUR_TEXT_REGION 45 344 49 344 51 STRAND 59 344 60 COLOUR_TEXT_REGION 59 344 60 344 51 STRAND 64 344 70 COLOUR_TEXT_REGION 64 344 70 344 51 STRAND 74 344 80 COLOUR_TEXT_REGION 74 344 80 344 51 STRAND 96 344 98 COLOUR_TEXT_REGION 96 344 98 344 51 HELIX 6 344 18 COLOUR_TEXT_REGION 6 344 18 344 50 HELIX 37 344 41 COLOUR_TEXT_REGION 37 344 41 344 50 HELIX 82 344 89 COLOUR_TEXT_REGION 82 344 89 344 50 STRAND 23 345 29 COLOUR_TEXT_REGION 23 345 29 345 51 STRAND 45 345 49 COLOUR_TEXT_REGION 45 345 49 345 51 STRAND 59 345 60 COLOUR_TEXT_REGION 59 345 60 345 51 STRAND 64 345 70 COLOUR_TEXT_REGION 64 345 70 345 51 STRAND 74 345 80 COLOUR_TEXT_REGION 74 345 80 345 51 STRAND 84 345 90 COLOUR_TEXT_REGION 84 345 90 345 51 STRAND 96 345 99 COLOUR_TEXT_REGION 96 345 99 345 51 HELIX 6 345 17 COLOUR_TEXT_REGION 6 345 17 345 50