SILENT_MODE BLOCK_FILE jp_PS5DqMR.concise.blc MAX_NSEQ 1004 MAX_INPUT_LEN 1006 OUTPUT_FILE jp_PS5DqMR.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 110 993 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 994 110 1003 H SPACE SUB_CHARS 1 994 110 1003 E SPACE SUB_CHARS 1 994 110 1003 - SPACE STRAND 5 997 10 COLOUR_TEXT_REGION 5 997 10 997 51 STRAND 13 997 16 COLOUR_TEXT_REGION 13 997 16 997 51 STRAND 19 997 23 COLOUR_TEXT_REGION 19 997 23 997 51 STRAND 29 997 35 COLOUR_TEXT_REGION 29 997 35 997 51 STRAND 39 997 41 COLOUR_TEXT_REGION 39 997 41 997 51 STRAND 53 997 64 COLOUR_TEXT_REGION 53 997 64 997 51 STRAND 69 997 75 COLOUR_TEXT_REGION 69 997 75 997 51 STRAND 79 997 85 COLOUR_TEXT_REGION 79 997 85 997 51 STRAND 95 997 100 COLOUR_TEXT_REGION 95 997 100 997 51 STRAND 105 997 107 COLOUR_TEXT_REGION 105 997 107 997 51 STRAND 5 1002 10 COLOUR_TEXT_REGION 5 1002 10 1002 51 STRAND 14 1002 16 COLOUR_TEXT_REGION 14 1002 16 1002 51 STRAND 19 1002 22 COLOUR_TEXT_REGION 19 1002 22 1002 51 STRAND 29 1002 35 COLOUR_TEXT_REGION 29 1002 35 1002 51 STRAND 39 1002 41 COLOUR_TEXT_REGION 39 1002 41 1002 51 STRAND 53 1002 64 COLOUR_TEXT_REGION 53 1002 64 1002 51 STRAND 69 1002 75 COLOUR_TEXT_REGION 69 1002 75 1002 51 STRAND 79 1002 84 COLOUR_TEXT_REGION 79 1002 84 1002 51 STRAND 95 1002 100 COLOUR_TEXT_REGION 95 1002 100 1002 51 STRAND 105 1002 107 COLOUR_TEXT_REGION 105 1002 107 1002 51 STRAND 5 1003 10 COLOUR_TEXT_REGION 5 1003 10 1003 51 STRAND 13 1003 16 COLOUR_TEXT_REGION 13 1003 16 1003 51 STRAND 19 1003 23 COLOUR_TEXT_REGION 19 1003 23 1003 51 STRAND 29 1003 35 COLOUR_TEXT_REGION 29 1003 35 1003 51 STRAND 39 1003 41 COLOUR_TEXT_REGION 39 1003 41 1003 51 STRAND 52 1003 64 COLOUR_TEXT_REGION 52 1003 64 1003 51 STRAND 69 1003 75 COLOUR_TEXT_REGION 69 1003 75 1003 51 STRAND 80 1003 85 COLOUR_TEXT_REGION 80 1003 85 1003 51 STRAND 95 1003 100 COLOUR_TEXT_REGION 95 1003 100 1003 51 STRAND 105 1003 107 COLOUR_TEXT_REGION 105 1003 107 1003 51