SILENT_MODE BLOCK_FILE jp_THJam4n.concise.blc MAX_NSEQ 942 MAX_INPUT_LEN 944 OUTPUT_FILE jp_THJam4n.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 284 931 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 932 284 941 H SPACE SUB_CHARS 1 932 284 941 E SPACE SUB_CHARS 1 932 284 941 - SPACE STRAND 7 935 7 COLOUR_TEXT_REGION 7 935 7 935 51 STRAND 13 935 17 COLOUR_TEXT_REGION 13 935 17 935 51 STRAND 35 935 38 COLOUR_TEXT_REGION 35 935 38 935 51 STRAND 45 935 46 COLOUR_TEXT_REGION 45 935 46 935 51 STRAND 59 935 62 COLOUR_TEXT_REGION 59 935 62 935 51 STRAND 83 935 86 COLOUR_TEXT_REGION 83 935 86 935 51 STRAND 133 935 134 COLOUR_TEXT_REGION 133 935 134 935 51 STRAND 157 935 159 COLOUR_TEXT_REGION 157 935 159 935 51 STRAND 179 935 183 COLOUR_TEXT_REGION 179 935 183 935 51 STRAND 204 935 207 COLOUR_TEXT_REGION 204 935 207 935 51 STRAND 228 935 231 COLOUR_TEXT_REGION 228 935 231 935 51 STRAND 237 935 237 COLOUR_TEXT_REGION 237 935 237 935 51 STRAND 252 935 254 COLOUR_TEXT_REGION 252 935 254 935 51 STRAND 261 935 261 COLOUR_TEXT_REGION 261 935 261 935 51 STRAND 272 935 275 COLOUR_TEXT_REGION 272 935 275 935 51 HELIX 107 935 111 COLOUR_TEXT_REGION 107 935 111 935 50 STRAND 13 940 17 COLOUR_TEXT_REGION 13 940 17 940 51 STRAND 35 940 38 COLOUR_TEXT_REGION 35 940 38 940 51 STRAND 43 940 47 COLOUR_TEXT_REGION 43 940 47 940 51 STRAND 59 940 62 COLOUR_TEXT_REGION 59 940 62 940 51 STRAND 67 940 69 COLOUR_TEXT_REGION 67 940 69 940 51 STRAND 83 940 86 COLOUR_TEXT_REGION 83 940 86 940 51 STRAND 108 940 109 COLOUR_TEXT_REGION 108 940 109 940 51 STRAND 132 940 135 COLOUR_TEXT_REGION 132 940 135 940 51 STRAND 156 940 159 COLOUR_TEXT_REGION 156 940 159 940 51 STRAND 180 940 183 COLOUR_TEXT_REGION 180 940 183 940 51 STRAND 204 940 207 COLOUR_TEXT_REGION 204 940 207 940 51 STRAND 212 940 214 COLOUR_TEXT_REGION 212 940 214 940 51 STRAND 228 940 231 COLOUR_TEXT_REGION 228 940 231 940 51 STRAND 237 940 238 COLOUR_TEXT_REGION 237 940 238 940 51 STRAND 252 940 254 COLOUR_TEXT_REGION 252 940 254 940 51 STRAND 261 940 263 COLOUR_TEXT_REGION 261 940 263 940 51 STRAND 272 940 275 COLOUR_TEXT_REGION 272 940 275 940 51 HELIX 98 940 100 COLOUR_TEXT_REGION 98 940 100 940 50 HELIX 107 940 107 COLOUR_TEXT_REGION 107 940 107 940 50 HELIX 110 940 112 COLOUR_TEXT_REGION 110 940 112 940 50 STRAND 7 941 8 COLOUR_TEXT_REGION 7 941 8 941 51 STRAND 13 941 17 COLOUR_TEXT_REGION 13 941 17 941 51 STRAND 35 941 38 COLOUR_TEXT_REGION 35 941 38 941 51 STRAND 59 941 62 COLOUR_TEXT_REGION 59 941 62 941 51 STRAND 84 941 86 COLOUR_TEXT_REGION 84 941 86 941 51 STRAND 204 941 207 COLOUR_TEXT_REGION 204 941 207 941 51 STRAND 228 941 232 COLOUR_TEXT_REGION 228 941 232 941 51 STRAND 274 941 275 COLOUR_TEXT_REGION 274 941 275 941 51 HELIX 105 941 111 COLOUR_TEXT_REGION 105 941 111 941 50 HELIX 120 941 120 COLOUR_TEXT_REGION 120 941 120 941 50 HELIX 132 941 134 COLOUR_TEXT_REGION 132 941 134 941 50 HELIX 153 941 160 COLOUR_TEXT_REGION 153 941 160 941 50 HELIX 177 941 183 COLOUR_TEXT_REGION 177 941 183 941 50 HELIX 246 941 253 COLOUR_TEXT_REGION 246 941 253 941 50