SILENT_MODE BLOCK_FILE jp_ASndvz9.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_ASndvz9.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 299 18 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 19 299 28 H SPACE SUB_CHARS 1 19 299 28 E SPACE SUB_CHARS 1 19 299 28 - SPACE STRAND 9 22 9 COLOUR_TEXT_REGION 9 22 9 22 51 STRAND 14 22 19 COLOUR_TEXT_REGION 14 22 19 22 51 STRAND 24 22 30 COLOUR_TEXT_REGION 24 22 30 22 51 STRAND 43 22 46 COLOUR_TEXT_REGION 43 22 46 22 51 STRAND 53 22 57 COLOUR_TEXT_REGION 53 22 57 22 51 STRAND 91 22 96 COLOUR_TEXT_REGION 91 22 96 22 51 STRAND 100 22 105 COLOUR_TEXT_REGION 100 22 105 22 51 STRAND 148 22 154 COLOUR_TEXT_REGION 148 22 154 22 51 STRAND 165 22 171 COLOUR_TEXT_REGION 165 22 171 22 51 STRAND 176 22 183 COLOUR_TEXT_REGION 176 22 183 22 51 STRAND 192 22 200 COLOUR_TEXT_REGION 192 22 200 22 51 STRAND 227 22 230 COLOUR_TEXT_REGION 227 22 230 22 51 STRAND 276 22 281 COLOUR_TEXT_REGION 276 22 281 22 51 STRAND 292 22 294 COLOUR_TEXT_REGION 292 22 294 22 51 HELIX 60 22 77 COLOUR_TEXT_REGION 60 22 77 22 50 HELIX 108 22 120 COLOUR_TEXT_REGION 108 22 120 22 50 HELIX 126 22 135 COLOUR_TEXT_REGION 126 22 135 22 50 HELIX 137 22 141 COLOUR_TEXT_REGION 137 22 141 22 50 HELIX 207 22 218 COLOUR_TEXT_REGION 207 22 218 22 50 HELIX 236 22 249 COLOUR_TEXT_REGION 236 22 249 22 50 HELIX 257 22 257 COLOUR_TEXT_REGION 257 22 257 22 50 HELIX 262 22 265 COLOUR_TEXT_REGION 262 22 265 22 50 HELIX 267 22 269 COLOUR_TEXT_REGION 267 22 269 22 50 STRAND 14 27 19 COLOUR_TEXT_REGION 14 27 19 27 51 STRAND 24 27 30 COLOUR_TEXT_REGION 24 27 30 27 51 STRAND 43 27 45 COLOUR_TEXT_REGION 43 27 45 27 51 STRAND 53 27 58 COLOUR_TEXT_REGION 53 27 58 27 51 STRAND 90 27 96 COLOUR_TEXT_REGION 90 27 96 27 51 STRAND 100 27 106 COLOUR_TEXT_REGION 100 27 106 27 51 STRAND 148 27 154 COLOUR_TEXT_REGION 148 27 154 27 51 STRAND 165 27 171 COLOUR_TEXT_REGION 165 27 171 27 51 STRAND 176 27 183 COLOUR_TEXT_REGION 176 27 183 27 51 STRAND 193 27 200 COLOUR_TEXT_REGION 193 27 200 27 51 STRAND 228 27 229 COLOUR_TEXT_REGION 228 27 229 27 51 STRAND 270 27 270 COLOUR_TEXT_REGION 270 27 270 27 51 STRAND 276 27 281 COLOUR_TEXT_REGION 276 27 281 27 51 STRAND 292 27 294 COLOUR_TEXT_REGION 292 27 294 27 51 HELIX 60 27 77 COLOUR_TEXT_REGION 60 27 77 27 50 HELIX 107 27 120 COLOUR_TEXT_REGION 107 27 120 27 50 HELIX 126 27 142 COLOUR_TEXT_REGION 126 27 142 27 50 HELIX 209 27 223 COLOUR_TEXT_REGION 209 27 223 27 50 HELIX 226 27 227 COLOUR_TEXT_REGION 226 27 227 27 50 HELIX 236 27 250 COLOUR_TEXT_REGION 236 27 250 27 50 HELIX 256 27 258 COLOUR_TEXT_REGION 256 27 258 27 50 HELIX 262 27 264 COLOUR_TEXT_REGION 262 27 264 27 50 HELIX 269 27 269 COLOUR_TEXT_REGION 269 27 269 27 50 HELIX 295 27 296 COLOUR_TEXT_REGION 295 27 296 27 50 STRAND 8 28 9 COLOUR_TEXT_REGION 8 28 9 28 51 STRAND 14 28 19 COLOUR_TEXT_REGION 14 28 19 28 51 STRAND 24 28 30 COLOUR_TEXT_REGION 24 28 30 28 51 STRAND 42 28 46 COLOUR_TEXT_REGION 42 28 46 28 51 STRAND 52 28 57 COLOUR_TEXT_REGION 52 28 57 28 51 STRAND 84 28 85 COLOUR_TEXT_REGION 84 28 85 28 51 STRAND 93 28 96 COLOUR_TEXT_REGION 93 28 96 28 51 STRAND 100 28 105 COLOUR_TEXT_REGION 100 28 105 28 51 STRAND 148 28 154 COLOUR_TEXT_REGION 148 28 154 28 51 STRAND 165 28 172 COLOUR_TEXT_REGION 165 28 172 28 51 STRAND 176 28 183 COLOUR_TEXT_REGION 176 28 183 28 51 STRAND 191 28 200 COLOUR_TEXT_REGION 191 28 200 28 51 STRAND 227 28 231 COLOUR_TEXT_REGION 227 28 231 28 51 STRAND 239 28 241 COLOUR_TEXT_REGION 239 28 241 28 51 STRAND 276 28 282 COLOUR_TEXT_REGION 276 28 282 28 51 STRAND 292 28 294 COLOUR_TEXT_REGION 292 28 294 28 51 STRAND 297 28 297 COLOUR_TEXT_REGION 297 28 297 28 51 HELIX 60 28 77 COLOUR_TEXT_REGION 60 28 77 28 50 HELIX 109 28 120 COLOUR_TEXT_REGION 109 28 120 28 50 HELIX 125 28 134 COLOUR_TEXT_REGION 125 28 134 28 50 HELIX 138 28 140 COLOUR_TEXT_REGION 138 28 140 28 50 HELIX 207 28 215 COLOUR_TEXT_REGION 207 28 215 28 50 HELIX 262 28 269 COLOUR_TEXT_REGION 262 28 269 28 50