Jpred secondary structure prediction results

QUERY           : CVIFPVEIDVSQTIIRDCQVDKQTRELVYINKIMNTQLTKPVLMMFNISGPIRSVTRKNNNLRDRIKSKVDEQFDQLERDYSDQMDGFHDSIKYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSIEAYEKYCLPKLVDERNDYYVAVCVLKPGFENGSNQVLSFEYNPIGNKVIVPFAHEINDTGLYEYDVVAYVDSVQFDGEQFEEFVQSLILPSSFKNSEKVLYYNEASKNKSMIYKALEFTTESSWGKSEKYNWKIFCNGFIYDKKSKVLYVKLHNVTSALNKNVILNTIKA : QUERY 
UniRef90_A1YRG5 : CVIFPVEIDVSQTVIKDCQVNKQTRELVYINKIMNIELTKPVLMMFNISGPIKSVTRKNNNLRDEIKSEIDKQFDQLERDHSTQFDGGH-CIKYFKDEHYSISCQSGNVLKSKFEKILKSHGYTDEKSIEAYKKYCLPKLVDEQNNYYVAVCVLKPGFEKGSNQVLSFEYNPIGNKVIVPFAHEINDTGLYEYDAAAYVDNVKFDGEQFEKFVQSLTLPSAY-DDEEVLYYNETSENKRMMYKALEFKTKSCWGKFEWDYWKIFCNGFIYDEKLKVLYVKLHNVTSRVNNNIILNI--- : UniRef90_A1YRG5
UniRef90_Q9IP70 : CVIFPVEVHVSQPIIRDCQVDKQTRELVYINKTTNTQPTKPVLTMFNISGPIRSETRKNKFKRDRIKSKEHEQFDPLQRDWSDQMGGFHHSIKYFRDEHYSVRCQNRSVFKSKFGKILQSHDYADKKCIEAYGKFFLPKF-GHRSGFYVAVSVWKPGLENSSFQVLSFEYNPDCYKVIVPFGHEIGVTGCLDDDVAAKQDSVEEERAKAENRVQSLMPPCCFKNSENLLSWGEASKNKSMWYNPKEFTTECRWPKSQNNNWKIFCNRFIYDKKRKVLYVKLHNVTSALNKNVIFNTI-- : UniRef90_Q9IP70
UniRef90_L0CLT1 : CVIFPVEIDVSQTVIQDCQIDKHVRELVYINKIMNSQVTKPILMMFNISGPIRNVTRKSNNLRSVIKSKIYEPFERLECDNSDQVDCCYDDVKYFKSEYYSVSCQSGNVLKTNFAKILKSHDYCDSKAIKSYEKYCLPKLVDA-NNYYVAVCVLKPGFEKSDDQVLSFEYNPIGKKIVIPIAHEINDKGVYEYDVAVYVDNVQFDGEQFEEFVKSLSLPSSFKDSEKVLYYNEHSKNKRMIYKAVEFTTDSNDGKGLQ--WKIFSNGFIYNKKTKVLYIKLHNVTSVLNKNVILNI--- : UniRef90_L0CLT1
UniRef90_U5KBL3 : CVLFPTDTEASRTVIRDTVIDCYTREMVYSNSISRRSLTKPTLMMFNLSGPVCGVERKGDEVRYEVERLVDEEFDKLELSSSTVCDG--PVVNIFKAQHYSVSCQRGRWLVDNYIQVLSDLGYTDAQSLLQFKTMCLPQLVTS-NDDYVVLCVLKPGFEDHKDKNLSFRYVPEKNRVVIPLAHEMNDNGLYDYNVVVLVDGVTCNDGHMTELVTSLSTSRDISRSTYRL-RDEVVNDRRCIYKALEF----RHGKDE---WRILSSGAIYSARDGVLMLRLKHVFTPINKNFAVESAKV : UniRef90_U5KBL3
UniRef90_R4ZDF1 : CILDP-EFFASCTTIIDVRHNDTKRELIYMNKLEPVKSKTDVKMLFHISGPLIDVKTDDVDTLINYKNTIDDEFSKFEKGNIQLDCDECDGIKKFETESYNVQSFPLNVFEKDYMEILKSMDTSEE-DIKSFIDNSLPAIIDNKSNCHVVMCVLKKSLFD-KEQIVKFIYEPIDNKIILPIMHEISPDGEYKYDVKCFIDNVSMDNKKMDEIHDWM---ADMKINRI------PSRNIKEIHETCHGYYSLRFLKSAYRTYNIH--GFIYLDNN--LYVKLSDVSNKRNHNIIFDIISV : UniRef90_R4ZDF1
UniRef90_R4ZFC0 : CILDP-EFFASSTTIIDIRHDDTKRELTYINKLEPLETRTHTKMLFHISGPLIDVKTDNVDTLIDYKNIIDKEFDKYKNDCTTKFETTKFETTKFETEAYHVQSFPLSEFEKNYVEILKNMDTSD-KDINNFIDITLPAVVDKKSDCHVVICILKKSLFD-KHQIVKFIYKPIDNKIILPIMCDISPNCEYKYDIRCFMDNVFINDIKIDEIRNFM---SNIKFSNRCINVKEIHSTKYNYNRS----YSLCYLKHERNKNITDVCGFIYDNNN--IYVKLENTISKLNTNIVFDIM-- : UniRef90_R4ZFC0
UniRef90_Q91BH0 : CVLIPT-FDASATTIVDCANDSSLRDLIYVNNVAVNYINRSVIMALNISGPVVSVNRVSMHIVHMYRSHIDRIFDRFNRTYSATVTDGGDIDRVLKSDDYTVVCMSRSELLDNYKKCLINEMGATQDDVEKFRKYCLKPLVETENDPYVVICSLKPKLLN-KNKTLCFTYKPQTGQVIVPLMHEINENGVYSYEVMAMIKDVRLSNKPL-----SMLERLKRSMDQIVLNHNE---NKYMMTNQLE--SLKYYLKSINSNEDDDLNKLMNVLNNLI----------------------- : UniRef90_Q91BH0
UniRef90_R4ZG30 : CILLP-ELSASNTLIVDEKYDKDVRRLIYINHLENNETNDNILMFFHISGKLLMIDETNMDEIMTHEKKIKCEFEKYECNTTKPDRCY---IKRFKSEMYHVLSMSINDFNNNYSKILKSMEYSDEYINTIFTKKCLEAINMQKNGCNVVICKINTNLLD-TKKILSFIYKPANDYILLPLMHEISDNNIYCYDVMCYVNNIKIDDSKIEYFMNNFNKKSKECDNDII---NTTNNDEFCIINRKKY---NSWKEVVYFNPI----GFIY--KNNELYVKL-DGKNKINTNFIFK---- : UniRef90_R4ZG30
UniRef90_R4ZG22 : CIILP-EFIADSTFIVDKDISKNIRKLTYVNKITNNNKNSPLLMLFHISGKIIQVEEETTKFVEKYKHKIISKFENYEVKSKFQLD--YCNYTEFIDEKYHVSCSTVENFKNVYYEILKKMKYDDEYILNIFEKQCLPSVLDKNSDCYVAICTLFPKTLDRDETVLSFIYEPQTDNIIVPIMHELSYNNLYEYKVYCYIDNIKM--YSMNNIYKFMENFNHYKQNNIIISDNDIKINIRL------------------DKYDTHCIGFIYEDNT--LFVKLIG-NSKYNYNFVFPIFKI : UniRef90_R4ZG22
UniRef90_Q1A4T1 : CILMP-GFEAHQTVILDQPNNRNFRDIVYINNVSHPDLNKNAIMAFIVSGEVKQVKEVTTEYAKFYKQKYDNVFSTMYENKCMLDCSNDISADEFISNNYIVVAFKLQYAEEKCVEYLNKWQ-CEEDEIVAFKNNCIPILMSEKKSAYVVLCCLKPELLNEDCTV-CVTYEPVNNIVIIPLQHEISEK--YKYDVLAIVRGVGCYKLPLATIRN------------------------------------------------------------------------------------- : UniRef90_Q1A4T1
UniRef90_Q0IL44 : CVTLST-FHFMDTILMDKPNDANLRDLIYSNRLVDGPTNCNVLFAFNLSGPLVAVNRVFNTTLEMCRKKLDGAMEFYDCSATDENRHNHKRARYYEMDCYEVLCLTHDDFKNNHEKYLRCVVGLERTVADAFKKECLDRLLNNQSKPYIVVCYARDATANIAQRSVSFVYKPEHGKVILPLMCVVHDGTRPNVIGMAIVQGVRLTNKPAQRL--------------------------------------------------------------------------------------- : UniRef90_Q0IL44
UniRef90_R4ZDP4 : ------DIILKNTKIIDTKINSNKRKFIYITKPCSDYINTNNIFMFPFYGKINNINIINNDDSNEINNTLLNIDNKFNKKINKYVSYFDINIFQNYNNGIKILYYKNDYFYKEYKNILLKNNICSEY-ITHINNKCIPLLINKYNEFYIILCIIENNNKQNILNNLHIDYELISKYIIIPTINNYNDNNIYNYDCKCYIDNIN--------------------------KYDQNNIISNIINEDYKFIDSNLILFKKLNNIYYIVNGLIYNKNEKILYIKL-NFNSKINNNIIMEI--- : UniRef90_R4ZDP4
UniRef90_Q9EN36 : ------DILLKNTKIIDIKTDNNKRKCTYITKILSNDVNYNNIFMIPFYGKINKINIINNDHNNYINSILLKINKYFDKKIDNNVYNFDTNIICNINENIQILYYKLDYFILEYKNILYKNNIKSDYIKYIYNNELLNNKINNINKYYIILCIIKNENNPKILNSNIFIYELLSNYIIIPTMSN-SNNNIYDYDYKCYIDNVNNYNHNNIIVNKNFKYIDKELFITK------------------------------KSNIIKDLCGFIYNNDKKILFIKL-NFSNEYNDNI------- : UniRef90_Q9EN36
UniRef90_R4ZEQ7 : -------------KIIDVKIDDNKRKFIYNANVIVYKSNSNKLILFPIYGNIIRISDKNEEDQTDIGNKILKNTIVFNSKVETLVNTYEYYVPSNNVIHVNLYYYKIDHFCNNYKTILKNNVTMDSNDIDLFIKNNKNIL-----DYYVILYIFNTN--ESFNMTIYIEYEKISKYIILPTSSNIKNN--YKYMYKCYIDNVK--------------------------SYKKNDIIKYNKCKYFKYIEDELLLTDKINNYYYNLNGYIYINKEKVLYIKL-DIDSEINNDIIVEII-- : UniRef90_R4ZEQ7

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181-------191-------201-------211-------221-------231-------241-------251-------261-------271-------281-------291------ :
OrigSeq         : CVIFPVEIDVSQTIIRDCQVDKQTRELVYINKIMNTQLTKPVLMMFNISGPIRSVTRKNNNLRDRIKSKVDEQFDQLERDYSDQMDGFHDSIKYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSIEAYEKYCLPKLVDERNDYYVAVCVLKPGFENGSNQVLSFEYNPIGNKVIVPFAHEINDTGLYEYDVVAYVDSVQFDGEQFEEFVQSLILPSSFKNSEKVLYYNEASKNKSMIYKALEFTTESSWGKSEKYNWKIFCNGFIYDKKSKVLYVKLHNVTSALNKNVILNTIKA : OrigSeq

Jnet            : --------E----EEEEEE----EEEEEEE------------EEEE------EEEEE--HHHHHHHHHHHHHHHHHH-------------EEEEEE---EEEEEE--HHHHHHHHHHHHH-----HHHHHHHHHH-HHHHH------EEEEEEE----------EEEEEEE----EEEEEEEE--------EEEEEEEEE------HHHHHHHHHHHH--------EEEE-----HHHHHHHHHHHHHH-------H----HHHH-HHH------EEEEEE----------EEE----- : Jnet
jhmm            : -------------EEEEEE----EEEEEEE------------EEE-------EEEEEE-HHHHHHHHHHHHHHHHHH------------EEEEEEE---EEEEEEEHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-----EEEEEEE----------EEEEEEE----EEEEEEEE---------EEEEEEEE--------HHHHHHHHHHHHHHH--HHEE------HHHHHHHHHHHHHHH-----HHH---HHH----HE-----EEEEEE----------EEEHH--- : jhmm
jpssm           : -------EE----EEEEEE----EEEEEEE-----------EEEEE-----EEEEEE--HHHHHHHHHHHHHHHHHH------EE-------EEEE---EEEEEE---HHHHHHHHHHHH----HHHHHHHHHH---HHH-------EEEEEEE----------EEEEEEEE---EEEEEEEE-------EEEEEEEEEE------HHHHHHHHH-----------EEEEE-------EEE--------------------HHHHHHHH------EEEEEEE---------EEE--E-- : jpssm

Lupas 14        : ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : B-BBBB-B-B--BBBBB--B---BB-BBBBB-B----B---BBBBBBBBB-B--B------BB--B---B--BB--B---B---B--B--BB--B---BB-BBBB-B--BB--BB-BB----BB---BB--B---BB--BB-----BBBBBBBBB--B------BBBB-B-B----BBBBBBB-B---BBB-B-BBBBB--B-B----B--BB-BB-----B----BBB----B--BB-BBB--B-BB---BB-------B-BBBBBBBB-----BBBBBB--B-B--B-BBBB-BB-- : Jnet_25
Jnet_5          : ----------------B---------BBBB-----------BBBBB-B-----------------B-------------------------B--B----B-B-B-----B---B--BB-------------B---B---B--------BBBBBB-----------B-B--------BBBBBB------------B-BBB--B------B--B---B------------------------B-----------------------BB-BB-------BBB-B----------BBB----- : Jnet_5
Jnet_0          : --------------------------BB---------------B---------------------------------------------------------B-------B--------------------------------------BBBB-------------------------BB---------------B-B-------------------------------------------------------------------------------B-B-------------B------ : Jnet_0
Jnet Rel        : 99887752113644899854886258887436777777774056401688627887317589999999999999885168874331577114476268658997311478999999986158862799999862222222317777448888843677777774488999727865899986157887732146788871347763029999875420131127723770457771244342112322105665310166500111001057884588886147777776334112258 : Jnet Rel


Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.