SILENT_MODE
BLOCK_FILE jp_qZwIoei.concise.blc
MAX_NSEQ 842
MAX_INPUT_LEN 844
OUTPUT_FILE jp_qZwIoei.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 146 831   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 832 146 841 H SPACE
SUB_CHARS 1 832 146 841 E SPACE
SUB_CHARS 1 832 146 841 - SPACE
STRAND 12 835 15
COLOUR_TEXT_REGION 12 835 15 835 51
STRAND 42 835 47
COLOUR_TEXT_REGION 42 835 47 835 51
STRAND 70 835 73
COLOUR_TEXT_REGION 70 835 73 835 51
STRAND 93 835 98
COLOUR_TEXT_REGION 93 835 98 835 51
STRAND 107 835 112
COLOUR_TEXT_REGION 107 835 112 835 51
STRAND 141 835 144
COLOUR_TEXT_REGION 141 835 144 835 51
HELIX 21 835 37
COLOUR_TEXT_REGION 21 835 37 835 50
HELIX 53 835 65
COLOUR_TEXT_REGION 53 835 65 835 50
HELIX 79 835 89
COLOUR_TEXT_REGION 79 835 89 835 50
HELIX 121 835 131
COLOUR_TEXT_REGION 121 835 131 835 50
STRAND 12 840 15
COLOUR_TEXT_REGION 12 840 15 840 51
STRAND 42 840 48
COLOUR_TEXT_REGION 42 840 48 840 51
STRAND 71 840 73
COLOUR_TEXT_REGION 71 840 73 840 51
STRAND 94 840 98
COLOUR_TEXT_REGION 94 840 98 840 51
STRAND 108 840 112
COLOUR_TEXT_REGION 108 840 112 840 51
STRAND 141 840 144
COLOUR_TEXT_REGION 141 840 144 840 51
HELIX 21 840 37
COLOUR_TEXT_REGION 21 840 37 840 50
HELIX 53 840 66
COLOUR_TEXT_REGION 53 840 66 840 50
HELIX 79 840 88
COLOUR_TEXT_REGION 79 840 88 840 50
HELIX 121 840 131
COLOUR_TEXT_REGION 121 840 131 840 50
STRAND 12 841 14
COLOUR_TEXT_REGION 12 841 14 841 51
STRAND 42 841 47
COLOUR_TEXT_REGION 42 841 47 841 51
STRAND 69 841 73
COLOUR_TEXT_REGION 69 841 73 841 51
STRAND 93 841 98
COLOUR_TEXT_REGION 93 841 98 841 51
STRAND 107 841 112
COLOUR_TEXT_REGION 107 841 112 841 51
STRAND 141 841 144
COLOUR_TEXT_REGION 141 841 144 841 51
HELIX 21 841 37
COLOUR_TEXT_REGION 21 841 37 841 50
HELIX 54 841 65
COLOUR_TEXT_REGION 54 841 65 841 50
HELIX 80 841 89
COLOUR_TEXT_REGION 80 841 89 841 50
HELIX 121 841 132
COLOUR_TEXT_REGION 121 841 132 841 50