SILENT_MODE
BLOCK_FILE jp_T2IHC9T.concise.blc
MAX_NSEQ 795
MAX_INPUT_LEN 797
OUTPUT_FILE jp_T2IHC9T.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 96 784   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 785 96 794 H SPACE
SUB_CHARS 1 785 96 794 E SPACE
SUB_CHARS 1 785 96 794 - SPACE
STRAND 9 788 12
COLOUR_TEXT_REGION 9 788 12 788 51
STRAND 39 788 46
COLOUR_TEXT_REGION 39 788 46 788 51
STRAND 50 788 55
COLOUR_TEXT_REGION 50 788 55 788 51
STRAND 61 788 67
COLOUR_TEXT_REGION 61 788 67 788 51
HELIX 18 788 29
COLOUR_TEXT_REGION 18 788 29 788 50
HELIX 71 788 88
COLOUR_TEXT_REGION 71 788 88 788 50
STRAND 9 793 12
COLOUR_TEXT_REGION 9 793 12 793 51
STRAND 39 793 46
COLOUR_TEXT_REGION 39 793 46 793 51
STRAND 50 793 54
COLOUR_TEXT_REGION 50 793 54 793 51
STRAND 61 793 67
COLOUR_TEXT_REGION 61 793 67 793 51
HELIX 18 793 29
COLOUR_TEXT_REGION 18 793 29 793 50
HELIX 71 793 88
COLOUR_TEXT_REGION 71 793 88 793 50
STRAND 9 794 12
COLOUR_TEXT_REGION 9 794 12 794 51
STRAND 39 794 46
COLOUR_TEXT_REGION 39 794 46 794 51
STRAND 50 794 55
COLOUR_TEXT_REGION 50 794 55 794 51
STRAND 61 794 67
COLOUR_TEXT_REGION 61 794 67 794 51
HELIX 16 794 29
COLOUR_TEXT_REGION 16 794 29 794 50
HELIX 71 794 88
COLOUR_TEXT_REGION 71 794 88 794 50