SILENT_MODE BLOCK_FILE jp_1YxnbGn.concise.blc MAX_NSEQ 1003 MAX_INPUT_LEN 1005 OUTPUT_FILE jp_1YxnbGn.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 123 992 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 993 123 1002 H SPACE SUB_CHARS 1 993 123 1002 E SPACE SUB_CHARS 1 993 123 1002 - SPACE STRAND 7 996 14 COLOUR_TEXT_REGION 7 996 14 996 51 STRAND 19 996 20 COLOUR_TEXT_REGION 19 996 20 996 51 STRAND 29 996 36 COLOUR_TEXT_REGION 29 996 36 996 51 STRAND 40 996 46 COLOUR_TEXT_REGION 40 996 46 996 51 STRAND 70 996 73 COLOUR_TEXT_REGION 70 996 73 996 51 STRAND 90 996 94 COLOUR_TEXT_REGION 90 996 94 996 51 HELIX 59 996 65 COLOUR_TEXT_REGION 59 996 65 996 50 HELIX 78 996 86 COLOUR_TEXT_REGION 78 996 86 996 50 HELIX 100 996 112 COLOUR_TEXT_REGION 100 996 112 996 50 HELIX 117 996 121 COLOUR_TEXT_REGION 117 996 121 996 50 STRAND 7 1001 14 COLOUR_TEXT_REGION 7 1001 14 1001 51 STRAND 19 1001 20 COLOUR_TEXT_REGION 19 1001 20 1001 51 STRAND 29 1001 36 COLOUR_TEXT_REGION 29 1001 36 1001 51 STRAND 40 1001 45 COLOUR_TEXT_REGION 40 1001 45 1001 51 STRAND 70 1001 73 COLOUR_TEXT_REGION 70 1001 73 1001 51 STRAND 90 1001 94 COLOUR_TEXT_REGION 90 1001 94 1001 51 HELIX 60 1001 64 COLOUR_TEXT_REGION 60 1001 64 1001 50 HELIX 78 1001 86 COLOUR_TEXT_REGION 78 1001 86 1001 50 HELIX 100 1001 111 COLOUR_TEXT_REGION 100 1001 111 1001 50 HELIX 117 1001 121 COLOUR_TEXT_REGION 117 1001 121 1001 50 STRAND 7 1002 13 COLOUR_TEXT_REGION 7 1002 13 1002 51 STRAND 19 1002 20 COLOUR_TEXT_REGION 19 1002 20 1002 51 STRAND 29 1002 36 COLOUR_TEXT_REGION 29 1002 36 1002 51 STRAND 40 1002 47 COLOUR_TEXT_REGION 40 1002 47 1002 51 STRAND 70 1002 73 COLOUR_TEXT_REGION 70 1002 73 1002 51 STRAND 90 1002 94 COLOUR_TEXT_REGION 90 1002 94 1002 51 HELIX 58 1002 65 COLOUR_TEXT_REGION 58 1002 65 1002 50 HELIX 80 1002 86 COLOUR_TEXT_REGION 80 1002 86 1002 50 HELIX 99 1002 112 COLOUR_TEXT_REGION 99 1002 112 1002 50 HELIX 117 1002 121 COLOUR_TEXT_REGION 117 1002 121 1002 50