Last position-specific scoring matrix computed, weighted observed percentages rounded down, information per position, and relative weight of gapless real matches to pseudocounts A R N D C Q E G H I L K M F P S T W Y V A R N D C Q E G H I L K M F P S T W Y V 1 E -1 0 0 0 -4 4 3 -2 6 -3 -3 0 -2 -3 -2 -1 -1 -3 0 -3 0 0 0 0 0 30 30 0 41 0 0 0 0 0 0 0 0 0 0 0 0.59 0.06 2 T 0 -1 0 -1 -1 -1 -1 -2 -2 -1 -2 -1 -1 -3 -1 1 5 -3 -2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0.61 0.08 3 C -1 -4 -3 -4 10 -3 -4 -3 -3 -2 -2 -4 -2 -3 -3 -1 -1 -3 -3 -1 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.45 0.08 4 A 5 -2 -2 -2 -1 -1 -1 0 -2 -2 -2 -1 -2 -3 -1 2 0 -3 -2 -1 84 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16 0 0 0 0 0.57 0.17 5 S -1 0 -2 -2 -2 -1 -1 -2 -2 0 3 3 0 -1 -2 2 -1 -3 -2 -1 0 0 0 0 0 0 0 0 0 0 47 29 0 0 0 24 0 0 0 0 0.25 0.17 6 R -2 5 -1 -2 -3 0 -1 -2 0 -3 -2 3 -2 -1 -2 -1 -1 -1 3 -2 1 57 1 1 0 1 1 1 0 1 1 17 0 0 1 1 1 0 15 1 0.56 0.15 7 C -1 -2 -2 -2 9 -2 -2 -2 -2 -1 -1 -2 -1 -2 -2 -1 -1 -2 -2 -1 2 1 1 2 71 1 2 2 1 1 3 2 1 1 2 2 2 0 1 2 0.97 0.12 8 P -2 -1 0 5 -3 -1 0 1 -2 -3 -3 1 -3 -4 4 -1 -1 -4 -3 -3 1 0 0 51 0 0 1 9 0 0 1 10 0 0 22 1 1 0 0 1 0.69 0.17 9 R -1 4 0 3 -3 0 1 0 -1 -4 -3 1 -3 -4 -2 1 -1 -4 -3 -3 0 30 0 26 0 0 9 8 0 0 0 9 0 0 0 17 0 0 0 0 0.44 0.19 10 P -1 -3 -3 -2 -4 -2 -2 -3 -3 -3 -4 -2 -3 -4 8 -1 -2 -4 -4 -3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 2.25 0.17 11 C -1 -4 -4 -4 10 -4 -5 -3 -4 -2 -2 -4 -2 -3 -4 -2 -2 -3 -3 -2 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.83 0.23 12 N 1 -2 3 -1 -2 -2 -2 -2 -2 3 -1 -2 -1 -2 1 2 -1 -4 -3 0 15 0 27 0 0 0 0 0 0 33 0 0 0 0 6 18 0 0 0 0 0.28 0.23 13 A 3 -2 4 4 -3 -1 0 -1 -1 -3 -3 -1 -3 -4 -2 0 -1 -4 -3 -2 35 0 31 34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.58 0.23 14 G -1 -3 -1 1 -3 -2 0 6 -3 -5 -4 -2 -3 -4 -3 -1 -2 -3 -4 -4 0 0 0 7 0 0 7 86 0 0 0 0 0 0 0 0 0 0 0 0 1.11 0.23 15 L 3 -2 -2 -2 -1 -1 -2 -1 -2 0 2 -2 0 -1 -2 2 -1 -2 -2 -1 32 1 1 1 0 1 1 1 0 1 36 1 0 1 1 20 1 0 0 1 0.24 0.19 16 C -1 -3 -3 -3 10 -3 -3 -3 -3 -2 -2 -3 -2 -3 -3 -1 -1 -2 -2 -1 1 1 1 1 85 1 1 1 0 1 1 1 0 1 1 1 1 0 0 1 1.41 0.19 17 C -1 -3 -3 -3 10 -3 -3 -3 -3 -2 -2 -3 -2 -3 -3 -1 -1 -2 -2 -1 1 1 1 1 85 1 1 1 0 1 1 1 0 1 1 1 1 0 0 1 1.41 0.19 18 S 0 -2 0 -1 -2 -1 -2 4 -2 -4 -4 -1 -3 -4 -2 4 0 -3 -3 -3 0 0 0 0 0 0 0 44 0 0 0 0 0 0 0 56 0 0 0 0 0.71 0.23 19 I 0 0 -1 -1 -3 2 1 -3 -2 1 -2 3 -1 -3 1 0 1 -4 -2 0 6 0 0 0 0 13 12 0 0 14 0 27 0 0 7 6 8 0 0 6 0.24 0.23 20 Y 0 -2 -1 1 -3 -1 2 -2 -1 -2 -2 -1 -2 3 -2 2 -1 -1 3 -2 8 0 0 7 0 0 20 0 0 0 0 0 0 21 0 29 0 0 14 0 0.33 0.23 21 G -1 -2 -1 -2 -3 -2 -2 6 -3 -4 -4 1 -3 -4 -3 -1 -2 -3 -4 -4 0 0 0 0 0 0 0 87 0 0 0 13 0 0 0 0 0 0 0 0 1.12 0.23 22 Y -3 -3 -4 -4 -3 -3 -4 -4 -2 3 0 -3 -1 3 -4 -3 -2 8 3 1 0 0 0 0 0 0 0 0 0 34 0 0 0 13 0 0 0 32 14 6 0.93 0.23 23 C -1 -4 -4 -4 10 -4 -5 -3 -4 -2 -2 -4 -2 -3 -4 -2 -2 -3 -3 -2 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.83 0.23 24 G 0 -3 -1 -2 -3 -3 -3 7 -3 -5 -5 -2 -4 -4 -3 -1 -2 -3 -4 -4 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 1.38 0.23 25 S -2 -2 1 -2 -3 -2 -2 -3 0 -2 -2 -2 -2 1 -3 1 1 1 7 -2 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 14 13 0 65 0 0.74 0.23 26 G 0 -3 -1 -2 -3 -2 -3 6 -3 -4 -4 -2 -3 -4 -3 -1 0 -3 -4 -4 0 0 0 0 0 0 0 92 0 0 0 0 0 0 0 0 8 0 0 0 1.21 0.23 27 A 0 -2 2 -2 -3 -2 -2 -2 -2 -2 -3 -2 -2 -4 7 0 -1 -4 -3 0 7 0 15 0 0 0 0 0 0 0 0 0 0 0 59 6 0 0 0 13 1.11 0.23 28 A 2 2 1 3 -2 -1 -1 -1 -2 -3 -3 -1 -2 -3 -2 2 2 -4 -3 -2 21 13 7 21 0 0 0 0 0 0 0 0 0 0 0 21 17 0 0 0 0.35 0.23 29 Y -3 -3 -3 -4 -3 -2 -3 -4 1 -2 -2 -3 -2 4 -4 -3 -2 2 8 -2 0 0 0 0 0 0 0 0 0 0 0 0 0 13 0 0 0 0 87 0 1.25 0.23 30 C -1 -4 -4 -4 10 -4 -5 -3 -4 -2 -2 -4 -2 -3 -4 -2 -2 -3 -3 -2 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.83 0.23 31 G 0 -3 -1 -2 -3 -3 -3 7 -3 -5 -5 -2 -4 -4 -3 -1 -2 -3 -4 -4 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 1.38 0.23 32 A 3 -2 -1 5 -2 -1 0 -1 -2 -1 -3 0 -2 -3 -2 0 -1 -4 -3 -2 43 0 0 44 0 0 0 0 0 6 0 6 0 0 0 0 0 0 0 0 0.50 0.23 33 G 0 -3 -1 -2 -3 -3 -3 7 -3 -5 -5 -2 -4 -4 -3 -1 -2 -3 -4 -4 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 1.38 0.23 34 N -1 -1 5 0 4 0 -1 -1 0 -2 -2 -1 -1 -2 -1 0 0 -2 -1 -1 3 2 45 2 14 2 3 3 1 2 4 3 1 2 2 3 3 1 1 3 0.37 0.13 35 C -1 -3 -3 -4 10 1 -3 -3 -3 -2 -2 -3 -2 -3 -3 -1 -2 -3 -3 -2 0 0 0 0 87 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.51 0.23 36 R 1 2 -1 -2 -2 4 0 -2 -1 -2 -2 0 -1 -3 -2 0 4 -3 -2 -2 13 14 0 0 0 32 0 0 0 0 0 0 0 0 0 0 41 0 0 0 0.47 0.23 37 C 0 -2 0 -1 4 -1 -1 2 -2 -3 -3 -1 -2 -3 -2 5 0 -3 -3 -2 0 0 0 0 14 0 0 13 0 0 0 0 0 0 0 73 0 0 0 0 0.61 0.23 38 Q -2 -1 4 0 -4 5 0 -2 0 -4 -3 0 -2 -3 2 -1 -1 -3 1 -3 0 0 38 0 0 41 0 0 0 0 0 0 0 0 13 0 0 0 8 0 0.64 0.23 39 C -1 -4 -4 -4 10 -4 -5 -3 -4 -2 -2 -4 -2 -3 -4 -2 -2 -3 -3 -2 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.83 0.23 40 R -1 4 -1 0 -4 1 3 -3 -1 -3 -3 1 -2 -4 4 -1 -1 -3 -3 -3 0 42 0 0 0 0 32 0 0 0 0 0 0 0 26 0 0 0 0 0 0.69 0.09 41 G 2 -2 -1 -2 -2 -2 -2 5 -2 -3 -3 -2 -2 -3 -2 0 -1 -3 -3 -2 32 0 0 0 0 0 0 68 0 0 0 0 0 0 0 0 0 0 0 0 0.77 0.09 K Lambda Standard Ungapped 0.1432 0.3291 Standard Gapped 0.0410 0.2670 PSI Ungapped 0.1531 0.3133 PSI Gapped 0.0469 0.2670