SILENT_MODE
BLOCK_FILE jp_E83ZdPP.concise.blc
MAX_NSEQ 789
MAX_INPUT_LEN 791
OUTPUT_FILE jp_E83ZdPP.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 117 778   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 779 117 788 H SPACE
SUB_CHARS 1 779 117 788 E SPACE
SUB_CHARS 1 779 117 788 - SPACE
STRAND 3 782 7
COLOUR_TEXT_REGION 3 782 7 782 51
STRAND 12 782 19
COLOUR_TEXT_REGION 12 782 19 782 51
STRAND 86 782 86
COLOUR_TEXT_REGION 86 782 86 782 51
STRAND 103 782 112
COLOUR_TEXT_REGION 103 782 112 782 51
STRAND 115 782 115
COLOUR_TEXT_REGION 115 782 115 782 51
HELIX 21 782 39
COLOUR_TEXT_REGION 21 782 39 782 50
HELIX 51 782 58
COLOUR_TEXT_REGION 51 782 58 782 50
HELIX 60 782 81
COLOUR_TEXT_REGION 60 782 81 782 50
STRAND 3 787 7
COLOUR_TEXT_REGION 3 787 7 787 51
STRAND 12 787 19
COLOUR_TEXT_REGION 12 787 19 787 51
STRAND 38 787 40
COLOUR_TEXT_REGION 38 787 40 787 51
STRAND 103 787 112
COLOUR_TEXT_REGION 103 787 112 787 51
STRAND 114 787 115
COLOUR_TEXT_REGION 114 787 115 787 51
HELIX 21 787 37
COLOUR_TEXT_REGION 21 787 37 787 50
HELIX 51 787 81
COLOUR_TEXT_REGION 51 787 81 787 50
STRAND 3 788 7
COLOUR_TEXT_REGION 3 788 7 788 51
STRAND 12 788 19
COLOUR_TEXT_REGION 12 788 19 788 51
STRAND 86 788 88
COLOUR_TEXT_REGION 86 788 88 788 51
STRAND 94 788 96
COLOUR_TEXT_REGION 94 788 96 788 51
STRAND 103 788 112
COLOUR_TEXT_REGION 103 788 112 788 51
HELIX 21 788 39
COLOUR_TEXT_REGION 21 788 39 788 50
HELIX 51 788 57
COLOUR_TEXT_REGION 51 788 57 788 50
HELIX 60 788 81
COLOUR_TEXT_REGION 60 788 81 788 50