QUERY                  : MNALVGCTTSFDPGWEVDAFGAVSNLCQPMEADLYGCADPCWWPAQVADTLNTYPNWSAGADDVMQDWRKLQSVFPETK : QUERY 
UniRef90_A1K4V3        : MSAVVGCTATVDPGWEVDAFGGVGSLCQPMEADLYGCADPCWWPAQVPDVMNTYPDWGKDAPDLTQDWRKLGSVFPGDK : UniRef90_A1K4V3
UniRef90_UPI000463D88F : MNSLVGCTTSFDPGWEVDPFGSVSNLCQPMEADLYACADPCWWPAQVPDTMNSYPNWSDKAADANQDWRNLQSVFPESK : UniRef90_UPI000463D88F
UniRef90_UPI000381068B : MQSIAGCTATTDPGWEIDAFGGVTSLCQPMESDLYGCADPCWWPAQVPDMMNTYPDWNEKAANSADNWRNLGTVFPADK : UniRef90_UPI000381068B
UniRef90_UPI0002890971 : MQTIAGCTSSFDPGWEVDPFGGVASLCQPMEADLYGCADPCWWPAQVPDTMNTYPHWGDGADRAEDDWRKLDSVYPG-- : UniRef90_UPI0002890971
UniRef90_C4KB03        : MQTVVGCTATTDPGWEIDAFGGAASLCQPMEADLYGCADSCWWPAQVPDTMSHYPDWGDGKADATRDWRKLDGIFED-- : UniRef90_C4KB03
UniRef90_UPI00047317FC : MSNVVGCTTTFDPGWEIDAFGGLSTLCQPMEADLYGCTDPCWWPAQVADNMNTSRDWSEGKNSALRDWRELQTLFPED- : UniRef90_UPI00047317FC
UniRef90_M2Z1F9        : MQVVTGCTSTLDPGWEVDPFGGIAALCQPVEADLYGCSDPCWWPVQVPDTINTHPDWSTEVPSAMRDWRKLQSVYNK-- : UniRef90_M2Z1F9
UniRef90_F2J2J7        : ---VAGCTSTLDPGWEVDPFGGVAALCQPMEADLYGCSDPCWWPAQVPDTINSYKDWNAGADNAGKDWRSLGTVFPSD- : UniRef90_F2J2J7
UniRef90_UPI00036CE750 : MQSVVGCTSTNDPGWEVDPFGGLGSLCQPMESDLYGCADACWWPAQVPDTMSSQPNWSMDVSKANEDWRKLDGIFPEEQ : UniRef90_UPI00036CE750
UniRef90_U7DD47        : MSAVAGCATTFDPGWEVDPFLGVAGLCQPMEADLYGCSDPCWWPAQVPDSLNTYTEWSVSNDSAPQDWTNLQAVFPK-- : UniRef90_U7DD47
UniRef90_A8ES18        : MSSVVGCVTTFDPGWEVDSDGGVASLCQPMEADLYGCSDPCWWPTQVPDTSSSYKKWSEKAPATKDDWRELENVYPK-- : UniRef90_A8ES18
UniRef90_V9VWI8        : MQTVAGCATTFDPGWEVDPFGGLAALCQPMEADLYGCSDPCWWPAQVPDIMVNHQNWDENAPNAAKDWRALGATYPTD- : UniRef90_V9VWI8
UniRef90_Q2G3V8        : MHVPMGCTLSFSPGWEVDAGGGTAGLCQPAERDLYDCYVTCFWPVQVPDHVNYSPDWASNCATAAKDWRSLDIIFP--- : UniRef90_Q2G3V8
UniRef90_K6D8R4        : LQLPFGCTTVFDPGWEADSSGSAAGGCQPMERDLYGCYGDCWWAAQVPDGMTKYPDWHQACPAAVRDWQKLKFV----- : UniRef90_K6D8R4
UniRef90_U1WZD2        : ---PMGCATLFDPGWETDFSGMVDGLCQPHYRDIYGCYGDCWWAAQVPDGLTNYGSYSDECPVAANDWRKLQYVKP--- : UniRef90_U1WZD2
UniRef90_UPI000360778E : LNMPVGCTTIFDTGWETNPRPATVGNCLSSARDYAGCAGDCWWPAQVPDGLTNSPDFDVACPNIARDWRTLK------- : UniRef90_UPI000360778E
UniRef90_K0N3W8        : --MPIGCTTIFDTGWETNPRAETPSNCLSSARDFTACSGSCWWPAQTPDSVTNFPDFQNQCQAIEKDWRNLNFVIKR-- : UniRef90_K0N3W8
UniRef90_W4LMM6        : ------------------AGDVTQRMALPWQADFYACSGDYWWPAQRPNSVIVPPSWSRGVAAMVTEWTKLGFIVPR-- : UniRef90_W4LMM6
UniRef90_V7GTF1        : ---------------EIAAGDLTALMAQPWQADFYDCAGS-WWPAQRPDEAPQSDDFDD-----TKEW----------- : UniRef90_V7GTF1
UniRef90_W6WMF3        : ------------------PGDVTKFMACPWQADFYECRDD-WWPAQRPDSVITDVTFDDLYKSYKTERRKIEAL----- : UniRef90_W6WMF3
UniRef90_Q7USU7        : ------------------PGYLTEGNALPWQADFLKCAGS-WWPAQRPDEVSSQVAWTRGKISNHKDWHELGIVV---- : UniRef90_Q7USU7
UniRef90_X5T0S5        : ----------------VAAGDLTALMAQPWQADFLKC-NTNWWPSQRPDTADNYKNWVRGA------------------ : UniRef90_X5T0S5
UniRef90_R1HPX8        : ----------------VAPGAVTARIAVPWQSDFYACS-TYWWPAPRPNQVDVSKDWARSVPGSAAQWAKMGFV----- : UniRef90_R1HPX8
UniRef90_B7K4X3        : -------------------------MAIPWQADFYDC-GLLWWPAQRPVSVNRFEQFSRGINNMVQYWSNLGFIV---- : UniRef90_B7K4X3
UniRef90_X5P2R8        : ---------------QLAPGDLTAHMALPWQADFFDCRGN-WWPSQRPDTVASSPQWVRGVTDMVHNFSKLGFV----- : UniRef90_X5P2R8
UniRef90_M5DKR4        : ------------------PGFLTERMALPWQADFLAC-GELWWPAQRPDVVTASQSFSRGIQDMVRWWTELGFIVKKGE : UniRef90_M5DKR4
UniRef90_K5EAN9        : ----------TDPSIYVDPFDVTALMAQPWQADYLKCH-TEWWPSQRPDLAPSFKPWNRGAQT---------------- : UniRef90_K5EAN9
UniRef90_UPI00046829D0 : ------------------PGFLTERMALPWQADFLAC-GELWWPAQRPDVVTASGQIQEDYSDMVRWWSELGFIVKK-- : UniRef90_UPI00046829D0

                       : 1---------11--------21--------31--------41--------51--------61--------71------- :
OrigSeq                : MNALVGCTTSFDPGWEVDAFGAVSNLCQPMEADLYGCADPCWWPAQVADTLNTYPNWSAGADDVMQDWRKLQSVFPETK : OrigSeq

Jnet                   : -------EE--------------------HHHHHHH------------------------HHHHHHHHHH--------- : Jnet
jhmm                   : ------EEE-------------HH-----HHHHHHH----------------------HHHHHHHHHHHH---EE---- : jhmm
jpssm                  : -------EE------------------HHHHHHH---------------------------HHHHHHHHH--------- : jpssm

Lupas 14               : ------------------------------------------------------------------------------- : Lupas 14
Lupas 21               : ------------------------------------------------------------------------------- : Lupas 21
Lupas 28               : ------------------------------------------------------------------------------- : Lupas 28

Jnet_25                : ---BBBBBBBBBBBBBBBB-B-B-BBBBBBBBBBBBB---BBBBBBBB--B--B--B---B--B---B--B--BB---- : Jnet_25
Jnet_5                 : -----BBB-----B----B------BB-BB-B-B--B----BBB--------------------------B-------- : Jnet_5
Jnet_0                 : --------------------------B---------------------------------------------------- : Jnet_0
Jnet Rel               : 9984410101577753357777323212043110306677777641466777777777222128888874266127899 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.