SILENT_MODE BLOCK_FILE jp_mXwDDZX.concise.blc MAX_NSEQ 1017 MAX_INPUT_LEN 1019 OUTPUT_FILE jp_mXwDDZX.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 162 1006 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 1007 162 1016 H SPACE SUB_CHARS 1 1007 162 1016 E SPACE SUB_CHARS 1 1007 162 1016 - SPACE HELIX 3 1010 14 COLOUR_TEXT_REGION 3 1010 14 1010 50 HELIX 26 1010 70 COLOUR_TEXT_REGION 26 1010 70 1010 50 HELIX 82 1010 104 COLOUR_TEXT_REGION 82 1010 104 1010 50 HELIX 106 1010 118 COLOUR_TEXT_REGION 106 1010 118 1010 50 HELIX 148 1010 159 COLOUR_TEXT_REGION 148 1010 159 1010 50 HELIX 2 1015 14 COLOUR_TEXT_REGION 2 1015 14 1015 50 HELIX 27 1015 46 COLOUR_TEXT_REGION 27 1015 46 1015 50 HELIX 48 1015 71 COLOUR_TEXT_REGION 48 1015 71 1015 50 HELIX 74 1015 75 COLOUR_TEXT_REGION 74 1015 75 1015 50 HELIX 81 1015 103 COLOUR_TEXT_REGION 81 1015 103 1015 50 HELIX 106 1015 118 COLOUR_TEXT_REGION 106 1015 118 1015 50 HELIX 148 1015 160 COLOUR_TEXT_REGION 148 1015 160 1015 50 STRAND 74 1016 75 COLOUR_TEXT_REGION 74 1016 75 1016 51 HELIX 3 1016 14 COLOUR_TEXT_REGION 3 1016 14 1016 50 HELIX 26 1016 64 COLOUR_TEXT_REGION 26 1016 64 1016 50 HELIX 84 1016 107 COLOUR_TEXT_REGION 84 1016 107 1016 50 HELIX 110 1016 118 COLOUR_TEXT_REGION 110 1016 118 1016 50 HELIX 148 1016 158 COLOUR_TEXT_REGION 148 1016 158 1016 50