SILENT_MODE
BLOCK_FILE jp_TgakPxe.concise.blc
MAX_NSEQ 511
MAX_INPUT_LEN 513
OUTPUT_FILE jp_TgakPxe.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 185 500   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 501 185 510 H SPACE
SUB_CHARS 1 501 185 510 E SPACE
SUB_CHARS 1 501 185 510 - SPACE
STRAND 43 504 43
COLOUR_TEXT_REGION 43 504 43 504 51
STRAND 62 504 67
COLOUR_TEXT_REGION 62 504 67 504 51
HELIX 10 504 14
COLOUR_TEXT_REGION 10 504 14 504 50
HELIX 24 504 42
COLOUR_TEXT_REGION 24 504 42 504 50
HELIX 80 504 95
COLOUR_TEXT_REGION 80 504 95 504 50
HELIX 113 504 141
COLOUR_TEXT_REGION 113 504 141 504 50
HELIX 146 504 161
COLOUR_TEXT_REGION 146 504 161 504 50
HELIX 172 504 181
COLOUR_TEXT_REGION 172 504 181 504 50
STRAND 62 509 68
COLOUR_TEXT_REGION 62 509 68 509 51
HELIX 10 509 13
COLOUR_TEXT_REGION 10 509 13 509 50
HELIX 24 509 44
COLOUR_TEXT_REGION 24 509 44 509 50
HELIX 80 509 95
COLOUR_TEXT_REGION 80 509 95 509 50
HELIX 111 509 142
COLOUR_TEXT_REGION 111 509 142 509 50
HELIX 148 509 161
COLOUR_TEXT_REGION 148 509 161 509 50
HELIX 172 509 181
COLOUR_TEXT_REGION 172 509 181 509 50
STRAND 40 510 44
COLOUR_TEXT_REGION 40 510 44 510 51
STRAND 61 510 67
COLOUR_TEXT_REGION 61 510 67 510 51
STRAND 76 510 78
COLOUR_TEXT_REGION 76 510 78 510 51
HELIX 10 510 14
COLOUR_TEXT_REGION 10 510 14 510 50
HELIX 26 510 37
COLOUR_TEXT_REGION 26 510 37 510 50
HELIX 80 510 94
COLOUR_TEXT_REGION 80 510 94 510 50
HELIX 113 510 141
COLOUR_TEXT_REGION 113 510 141 510 50
HELIX 145 510 161
COLOUR_TEXT_REGION 145 510 161 510 50
HELIX 173 510 182
COLOUR_TEXT_REGION 173 510 182 510 50