SILENT_MODE
BLOCK_FILE jp_YyzYGkJ.concise.blc
MAX_NSEQ 511
MAX_INPUT_LEN 513
OUTPUT_FILE jp_YyzYGkJ.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 186 500   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 501 186 510 H SPACE
SUB_CHARS 1 501 186 510 E SPACE
SUB_CHARS 1 501 186 510 - SPACE
STRAND 5 504 7
COLOUR_TEXT_REGION 5 504 7 504 51
STRAND 13 504 19
COLOUR_TEXT_REGION 13 504 19 504 51
STRAND 25 504 31
COLOUR_TEXT_REGION 25 504 31 504 51
STRAND 43 504 50
COLOUR_TEXT_REGION 43 504 50 504 51
STRAND 55 504 61
COLOUR_TEXT_REGION 55 504 61 504 51
STRAND 70 504 75
COLOUR_TEXT_REGION 70 504 75 504 51
STRAND 80 504 86
COLOUR_TEXT_REGION 80 504 86 504 51
STRAND 102 504 105
COLOUR_TEXT_REGION 102 504 105 504 51
STRAND 114 504 121
COLOUR_TEXT_REGION 114 504 121 504 51
STRAND 140 504 145
COLOUR_TEXT_REGION 140 504 145 504 51
STRAND 160 504 163
COLOUR_TEXT_REGION 160 504 163 504 51
STRAND 167 504 172
COLOUR_TEXT_REGION 167 504 172 504 51
HELIX 182 504 184
COLOUR_TEXT_REGION 182 504 184 504 50
STRAND 5 509 7
COLOUR_TEXT_REGION 5 509 7 509 51
STRAND 13 509 19
COLOUR_TEXT_REGION 13 509 19 509 51
STRAND 25 509 31
COLOUR_TEXT_REGION 25 509 31 509 51
STRAND 43 509 50
COLOUR_TEXT_REGION 43 509 50 509 51
STRAND 55 509 60
COLOUR_TEXT_REGION 55 509 60 509 51
STRAND 70 509 75
COLOUR_TEXT_REGION 70 509 75 509 51
STRAND 80 509 86
COLOUR_TEXT_REGION 80 509 86 509 51
STRAND 102 509 105
COLOUR_TEXT_REGION 102 509 105 509 51
STRAND 114 509 121
COLOUR_TEXT_REGION 114 509 121 509 51
STRAND 140 509 145
COLOUR_TEXT_REGION 140 509 145 509 51
STRAND 160 509 163
COLOUR_TEXT_REGION 160 509 163 509 51
STRAND 167 509 172
COLOUR_TEXT_REGION 167 509 172 509 51
HELIX 182 509 184
COLOUR_TEXT_REGION 182 509 184 509 50
STRAND 5 510 7
COLOUR_TEXT_REGION 5 510 7 510 51
STRAND 13 510 19
COLOUR_TEXT_REGION 13 510 19 510 51
STRAND 25 510 31
COLOUR_TEXT_REGION 25 510 31 510 51
STRAND 43 510 50
COLOUR_TEXT_REGION 43 510 50 510 51
STRAND 56 510 61
COLOUR_TEXT_REGION 56 510 61 510 51
STRAND 69 510 75
COLOUR_TEXT_REGION 69 510 75 510 51
STRAND 80 510 83
COLOUR_TEXT_REGION 80 510 83 510 51
STRAND 101 510 105
COLOUR_TEXT_REGION 101 510 105 510 51
STRAND 114 510 121
COLOUR_TEXT_REGION 114 510 121 510 51
STRAND 125 510 126
COLOUR_TEXT_REGION 125 510 126 510 51
STRAND 140 510 145
COLOUR_TEXT_REGION 140 510 145 510 51
STRAND 161 510 163
COLOUR_TEXT_REGION 161 510 163 510 51
STRAND 168 510 173
COLOUR_TEXT_REGION 168 510 173 510 51
HELIX 182 510 184
COLOUR_TEXT_REGION 182 510 184 510 50