SILENT_MODE BLOCK_FILE jp_QzxzLfC.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_QzxzLfC.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 117 6 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 7 117 16 H SPACE SUB_CHARS 1 7 117 16 E SPACE SUB_CHARS 1 7 117 16 - SPACE STRAND 6 10 11 COLOUR_TEXT_REGION 6 10 11 10 51 STRAND 16 10 21 COLOUR_TEXT_REGION 16 10 21 10 51 STRAND 31 10 37 COLOUR_TEXT_REGION 31 10 37 10 51 STRAND 45 10 51 COLOUR_TEXT_REGION 45 10 51 10 51 STRAND 81 10 86 COLOUR_TEXT_REGION 81 10 86 10 51 STRAND 98 10 102 COLOUR_TEXT_REGION 98 10 102 10 51 HELIX 52 10 52 COLOUR_TEXT_REGION 52 10 52 10 50 STRAND 6 15 11 COLOUR_TEXT_REGION 6 15 11 15 51 STRAND 16 15 21 COLOUR_TEXT_REGION 16 15 21 15 51 STRAND 31 15 37 COLOUR_TEXT_REGION 31 15 37 15 51 STRAND 45 15 47 COLOUR_TEXT_REGION 45 15 47 15 51 STRAND 82 15 86 COLOUR_TEXT_REGION 82 15 86 15 51 STRAND 99 15 99 COLOUR_TEXT_REGION 99 15 99 15 51 HELIX 48 15 53 COLOUR_TEXT_REGION 48 15 53 15 50 HELIX 58 15 59 COLOUR_TEXT_REGION 58 15 59 15 50 HELIX 61 15 61 COLOUR_TEXT_REGION 61 15 61 15 50 STRAND 6 16 11 COLOUR_TEXT_REGION 6 16 11 16 51 STRAND 16 16 21 COLOUR_TEXT_REGION 16 16 21 16 51 STRAND 32 16 37 COLOUR_TEXT_REGION 32 16 37 16 51 STRAND 45 16 52 COLOUR_TEXT_REGION 45 16 52 16 51 STRAND 81 16 86 COLOUR_TEXT_REGION 81 16 86 16 51 STRAND 97 16 102 COLOUR_TEXT_REGION 97 16 102 16 51 STRAND 112 16 113 COLOUR_TEXT_REGION 112 16 113 16 51