QUERY           : IPNIATYTGTIQGKGEVCIIGNKEGKTRGGELYAVLHSTNVNADMTLILLRNVGGNGWGEIKRNDIDKPLKYEDYYTSGLSWIWKIKNNSSETSNYSLDATVHDDKEDSDVLTKCPV : QUERY 
UniRef90_A7FHV5 : IPNIATYTGTIQGKGEVCIIGNKEGKTRGGELYAVLHSTNVNADMTLILLRNVGGNGWGEIKRNDIDKPLKYEDYYTSGLSWIWKIKNNSSETSNYSLDATVHDDKEDSDVLTKCPV : UniRef90_A7FHV5
UniRef90_W8GDZ2 : IPNIETYTGTIQGKGEVCIRGNKEGKSRGGELYAVLRSTNANADMTLILLCSI-RDGWKEVKRSDIDRPLRYEDYYTPGLSWIWEIKNNSSEASDYSLSATVHDDKEDSDVLMKCP- : UniRef90_W8GDZ2

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111---- :
OrigSeq         : IPNIATYTGTIQGKGEVCIIGNKEGKTRGGELYAVLHSTNVNADMTLILLRNVGGNGWGEIKRNDIDKPLKYEDYYTSGLSWIWKIKNNSSETSNYSLDATVHDDKEDSDVLTKCPV : OrigSeq

Jnet            : -----EEEEEE----EEEEEE---------EEEEEEE-------EEEEEEEH----------------------------EEEEEE-----------EEEEE--------------- : Jnet
jhmm            : -----EEEEEE----EEEEEE---------EEEEEEE-------EEEHHHHHH----HH-H--------------------EEEEE------------E------------------ : jhmm
jpssm           : -----EEEEEE----EEEEEE----------EEEEEE-------EEEEEEEE----------------------------EEEEEE----------EEEEEE---------EE---- : jpssm

Lupas 14        : --------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : --------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : --------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : ---B--B-B-B-B-B-BBB-B-------BB-BBBBB----B-B-BBBBBBB-B---BB--B----B--BB-B--BB--BBBBBB-B---------B-B-B-B------B-BB--B-- : Jnet_25
Jnet_5          : ----------B-----BBB------------B-BBB--------BBBBBB-----------------------------B-BB--B-----------B------------------- : Jnet_5
Jnet_0          : -----------------B-----------------B----------B-B-------------------------------------------------------------------- : Jnet_0
Jnet Rel        : 999825888855870789884367777775258888537888745884320127777314133567776544566677751788743677777774128440467776441122799 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.