SILENT_MODE BLOCK_FILE jp_mH9uSQX.concise.blc MAX_NSEQ 68 MAX_INPUT_LEN 70 OUTPUT_FILE jp_mH9uSQX.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 191 57 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 58 191 67 H SPACE SUB_CHARS 1 58 191 67 E SPACE SUB_CHARS 1 58 191 67 - SPACE STRAND 37 61 37 COLOUR_TEXT_REGION 37 61 37 61 51 STRAND 53 61 58 COLOUR_TEXT_REGION 53 61 58 61 51 STRAND 115 61 119 COLOUR_TEXT_REGION 115 61 119 61 51 STRAND 127 61 137 COLOUR_TEXT_REGION 127 61 137 61 51 STRAND 143 61 162 COLOUR_TEXT_REGION 143 61 162 61 51 STRAND 170 61 185 COLOUR_TEXT_REGION 170 61 185 61 51 HELIX 2 61 6 COLOUR_TEXT_REGION 2 61 6 61 50 HELIX 14 61 27 COLOUR_TEXT_REGION 14 61 27 61 50 HELIX 39 61 47 COLOUR_TEXT_REGION 39 61 47 61 50 HELIX 71 61 86 COLOUR_TEXT_REGION 71 61 86 61 50 HELIX 88 61 88 COLOUR_TEXT_REGION 88 61 88 61 50 HELIX 92 61 102 COLOUR_TEXT_REGION 92 61 102 61 50 STRAND 54 66 58 COLOUR_TEXT_REGION 54 66 58 66 51 STRAND 115 66 119 COLOUR_TEXT_REGION 115 66 119 66 51 STRAND 127 66 137 COLOUR_TEXT_REGION 127 66 137 66 51 STRAND 143 66 163 COLOUR_TEXT_REGION 143 66 163 66 51 STRAND 170 66 185 COLOUR_TEXT_REGION 170 66 185 66 51 HELIX 2 66 7 COLOUR_TEXT_REGION 2 66 7 66 50 HELIX 14 66 28 COLOUR_TEXT_REGION 14 66 28 66 50 HELIX 39 66 47 COLOUR_TEXT_REGION 39 66 47 66 50 HELIX 71 66 86 COLOUR_TEXT_REGION 71 66 86 66 50 HELIX 88 66 89 COLOUR_TEXT_REGION 88 66 89 66 50 HELIX 92 66 102 COLOUR_TEXT_REGION 92 66 102 66 50 STRAND 36 67 38 COLOUR_TEXT_REGION 36 67 38 67 51 STRAND 53 67 59 COLOUR_TEXT_REGION 53 67 59 67 51 STRAND 115 67 118 COLOUR_TEXT_REGION 115 67 118 67 51 STRAND 127 67 137 COLOUR_TEXT_REGION 127 67 137 67 51 STRAND 143 67 157 COLOUR_TEXT_REGION 143 67 157 67 51 STRAND 161 67 162 COLOUR_TEXT_REGION 161 67 162 67 51 STRAND 170 67 185 COLOUR_TEXT_REGION 170 67 185 67 51 HELIX 15 67 24 COLOUR_TEXT_REGION 15 67 24 67 50 HELIX 40 67 47 COLOUR_TEXT_REGION 40 67 47 67 50 HELIX 70 67 88 COLOUR_TEXT_REGION 70 67 88 67 50 HELIX 92 67 102 COLOUR_TEXT_REGION 92 67 102 67 50