SILENT_MODE
BLOCK_FILE jp_uvvHwgq.concise.blc
MAX_NSEQ 346
MAX_INPUT_LEN 348
OUTPUT_FILE jp_uvvHwgq.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 119 335   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 336 119 345 H SPACE
SUB_CHARS 1 336 119 345 E SPACE
SUB_CHARS 1 336 119 345 - SPACE
STRAND 10 339 10
COLOUR_TEXT_REGION 10 339 10 339 51
HELIX 15 339 23
COLOUR_TEXT_REGION 15 339 23 339 50
HELIX 28 339 46
COLOUR_TEXT_REGION 28 339 46 339 50
HELIX 59 339 78
COLOUR_TEXT_REGION 59 339 78 339 50
HELIX 86 339 116
COLOUR_TEXT_REGION 86 339 116 339 50
STRAND 8 344 11
COLOUR_TEXT_REGION 8 344 11 344 51
HELIX 15 344 23
COLOUR_TEXT_REGION 15 344 23 344 50
HELIX 27 344 46
COLOUR_TEXT_REGION 27 344 46 344 50
HELIX 59 344 78
COLOUR_TEXT_REGION 59 344 78 344 50
HELIX 86 344 117
COLOUR_TEXT_REGION 86 344 117 344 50
STRAND 12 345 12
COLOUR_TEXT_REGION 12 345 12 345 51
HELIX 15 345 18
COLOUR_TEXT_REGION 15 345 18 345 50
HELIX 29 345 45
COLOUR_TEXT_REGION 29 345 45 345 50
HELIX 58 345 78
COLOUR_TEXT_REGION 58 345 78 345 50
HELIX 86 345 116
COLOUR_TEXT_REGION 86 345 116 345 50