SILENT_MODE
BLOCK_FILE jp_u3qVaFx.concise.blc
MAX_NSEQ 270
MAX_INPUT_LEN 272
OUTPUT_FILE jp_u3qVaFx.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 99 259   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 260 99 269 H SPACE
SUB_CHARS 1 260 99 269 E SPACE
SUB_CHARS 1 260 99 269 - SPACE
HELIX 3 263 11
COLOUR_TEXT_REGION 3 263 11 263 50
HELIX 17 263 18
COLOUR_TEXT_REGION 17 263 18 263 50
HELIX 30 263 38
COLOUR_TEXT_REGION 30 263 38 263 50
HELIX 41 263 61
COLOUR_TEXT_REGION 41 263 61 263 50
HELIX 77 263 96
COLOUR_TEXT_REGION 77 263 96 263 50
HELIX 3 268 10
COLOUR_TEXT_REGION 3 268 10 268 50
HELIX 17 268 18
COLOUR_TEXT_REGION 17 268 18 268 50
HELIX 20 268 20
COLOUR_TEXT_REGION 20 268 20 268 50
HELIX 30 268 38
COLOUR_TEXT_REGION 30 268 38 268 50
HELIX 41 268 60
COLOUR_TEXT_REGION 41 268 60 268 50
HELIX 77 268 97
COLOUR_TEXT_REGION 77 268 97 268 50
HELIX 3 269 18
COLOUR_TEXT_REGION 3 269 18 269 50
HELIX 30 269 37
COLOUR_TEXT_REGION 30 269 37 269 50
HELIX 41 269 61
COLOUR_TEXT_REGION 41 269 61 269 50
HELIX 76 269 96
COLOUR_TEXT_REGION 76 269 96 269 50