SILENT_MODE
BLOCK_FILE jp_yK6Fq_W.concise.blc
MAX_NSEQ 222
MAX_INPUT_LEN 224
OUTPUT_FILE jp_yK6Fq_W.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 73 211   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 212 73 221 H SPACE
SUB_CHARS 1 212 73 221 E SPACE
SUB_CHARS 1 212 73 221 - SPACE
STRAND 11 215 18
COLOUR_TEXT_REGION 11 215 18 215 51
HELIX 28 215 30
COLOUR_TEXT_REGION 28 215 30 215 50
HELIX 33 215 42
COLOUR_TEXT_REGION 33 215 42 215 50
HELIX 44 215 68
COLOUR_TEXT_REGION 44 215 68 215 50
STRAND 11 220 18
COLOUR_TEXT_REGION 11 220 18 220 51
STRAND 58 220 58
COLOUR_TEXT_REGION 58 220 58 220 51
HELIX 28 220 29
COLOUR_TEXT_REGION 28 220 29 220 50
HELIX 33 220 41
COLOUR_TEXT_REGION 33 220 41 220 50
HELIX 45 220 57
COLOUR_TEXT_REGION 45 220 57 220 50
HELIX 61 220 68
COLOUR_TEXT_REGION 61 220 68 220 50
STRAND 11 221 17
COLOUR_TEXT_REGION 11 221 17 221 51
HELIX 21 221 21
COLOUR_TEXT_REGION 21 221 21 221 50
HELIX 23 221 23
COLOUR_TEXT_REGION 23 221 23 221 50
HELIX 25 221 25
COLOUR_TEXT_REGION 25 221 25 221 50
HELIX 28 221 31
COLOUR_TEXT_REGION 28 221 31 221 50
HELIX 33 221 68
COLOUR_TEXT_REGION 33 221 68 221 50