SILENT_MODE
BLOCK_FILE jp_RM4QpLq.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_RM4QpLq.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 156 21   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 22 156 31 H SPACE
SUB_CHARS 1 22 156 31 E SPACE
SUB_CHARS 1 22 156 31 - SPACE
HELIX 3 25 11
COLOUR_TEXT_REGION 3 25 11 25 50
HELIX 15 25 20
COLOUR_TEXT_REGION 15 25 20 25 50
HELIX 37 25 53
COLOUR_TEXT_REGION 37 25 53 25 50
HELIX 56 25 70
COLOUR_TEXT_REGION 56 25 70 25 50
HELIX 82 25 96
COLOUR_TEXT_REGION 82 25 96 25 50
HELIX 103 25 111
COLOUR_TEXT_REGION 103 25 111 25 50
HELIX 121 25 125
COLOUR_TEXT_REGION 121 25 125 25 50
HELIX 130 25 149
COLOUR_TEXT_REGION 130 25 149 25 50
HELIX 3 30 12
COLOUR_TEXT_REGION 3 30 12 30 50
HELIX 15 30 20
COLOUR_TEXT_REGION 15 30 20 30 50
HELIX 37 30 53
COLOUR_TEXT_REGION 37 30 53 30 50
HELIX 56 30 70
COLOUR_TEXT_REGION 56 30 70 30 50
HELIX 82 30 96
COLOUR_TEXT_REGION 82 30 96 30 50
HELIX 104 30 111
COLOUR_TEXT_REGION 104 30 111 30 50
HELIX 121 30 125
COLOUR_TEXT_REGION 121 30 125 30 50
HELIX 130 30 148
COLOUR_TEXT_REGION 130 30 148 30 50
STRAND 27 31 28
COLOUR_TEXT_REGION 27 31 28 31 51
HELIX 3 31 10
COLOUR_TEXT_REGION 3 31 10 31 50
HELIX 16 31 20
COLOUR_TEXT_REGION 16 31 20 31 50
HELIX 37 31 53
COLOUR_TEXT_REGION 37 31 53 31 50
HELIX 56 31 69
COLOUR_TEXT_REGION 56 31 69 31 50
HELIX 85 31 96
COLOUR_TEXT_REGION 85 31 96 31 50
HELIX 102 31 110
COLOUR_TEXT_REGION 102 31 110 31 50
HELIX 121 31 124
COLOUR_TEXT_REGION 121 31 124 31 50
HELIX 132 31 149
COLOUR_TEXT_REGION 132 31 149 31 50