QUERY           : QHLCPKCGVGVLEPVYNEKGEIKVFRCSNPACDYEE : QUERY 
UniRef90_T0N637 : -YICPKCNSGKLEPVYNDNGEIKFFRCDREDCGYIE : UniRef90_T0N637
UniRef90_T0M111 : KFRCPVCMVGTMEPVYNAKGEITVFKCNNESCGHME : UniRef90_T0M111

                : 1---------11--------21--------31---- :
OrigSeq         : QHLCPKCGVGVLEPVYNEKGEIKVFRCSNPACDYEE : OrigSeq

Jnet            : ---------EEEEEEE----EEEEEE---------- : Jnet
jhmm            : -EE------EEEEEE-----EEEEEE---------- : jhmm
jpssm           : ---------EEEEEEE----EEEEEEE--------- : jpssm

Lupas 14        : ------------------------------------ : Lupas 14
Lupas 21        : ------------------------------------ : Lupas 21
Lupas 28        : ------------------------------------ : Lupas 28

Jnet_25         : --BB--B-BB-BBBBBB----B-BB-B----B-B-- : Jnet_25
Jnet_5          : ---B-------B---------B-B--B--------- : Jnet_5
Jnet_0          : ------------------------------------ : Jnet_0
Jnet Rel        : 841567664578997258855899861467777889 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.